Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400061016 | Potato | cytosol | 94.58 | 94.58 |
| Solyc01g104510.2.1 | Tomato | nucleus | 94.34 | 94.34 |
| KRH42369 | Soybean | nucleus | 93.4 | 93.18 |
| KRH58491 | Soybean | nucleus | 92.92 | 92.71 |
| AT5G58230.1 | Thale cress | nucleus | 92.22 | 92.22 |
| GSMUA_Achr4P31680_001 | Banana | nucleus | 89.15 | 89.36 |
| TraesCS5B01G378700.1 | Wheat | nucleus | 87.97 | 87.15 |
| TraesCS5D01G385800.1 | Wheat | cytosol | 45.75 | 87.0 |
| TraesCSU01G072700.1 | Wheat | nucleus | 87.74 | 86.92 |
| TraesCS5D01G385600.1 | Wheat | nucleus | 87.74 | 86.92 |
| Zm00001d033252_P001 | Maize | cytosol, nucleus, plastid | 23.82 | 86.32 |
| Os03t0640100-01 | Rice | cytosol | 87.03 | 86.22 |
| Zm00001d033248_P002 | Maize | cytoskeleton, cytosol, nucleus | 87.5 | 86.08 |
| Zm00001d033247_P001 | Maize | nucleus | 87.03 | 85.61 |
| CDY43875 | Canola | nucleus | 83.49 | 83.1 |
| CDY02805 | Canola | nucleus | 81.6 | 82.58 |
| Zm00001d013702_P001 | Maize | nucleus | 83.49 | 82.13 |
| CDY62688 | Canola | nucleus | 81.13 | 80.75 |
| Bra002667.1-P | Field mustard | nucleus | 81.13 | 80.75 |
| Bra020379.1-P | Field mustard | cytosol | 77.12 | 78.61 |
| CDY32715 | Canola | nucleus | 77.12 | 78.61 |
| GSMUA_Achr5P02390_001 | Banana | cytosol | 77.59 | 78.33 |
| OQU91278 | Sorghum | cytosol, nucleus, plastid | 87.26 | 60.86 |
| CDX88663 | Canola | nucleus | 90.09 | 60.06 |
| CDY58569 | Canola | cytosol | 90.09 | 60.06 |
| VIT_03s0038g02430.t01 | Wine grape | cytosol | 54.72 | 57.86 |
| VIT_09s0002g02150.t01 | Wine grape | nucleus | 33.73 | 31.57 |
| VIT_11s0016g02170.t01 | Wine grape | nucleus | 32.31 | 26.97 |
| VIT_11s0016g02270.t01 | Wine grape | nucleus | 25.24 | 22.57 |
| VIT_10s0003g01320.t01 | Wine grape | cytosol | 16.75 | 18.21 |
Protein Annotations
| EntrezGene:100247592 | wikigene:100247592 | MapMan:12.2.1.3 | MapMan:12.3.3.1.1.1 | Gene3D:2.130.10.10 | EMBL:AM455630 |
| ProteinID:CAN72267 | ProteinID:CAN72267.1 | ProteinID:CCB61241 | ProteinID:CCB61241.1 | UniProt:F6I2S4 | EMBL:FN596738 |
| InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | InterPro:Histone-bd_RBBP4_N | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| EntrezGene:LOC100247592 | wikigene:LOC100247592 | PFAM:PF00400 | PFAM:PF12265 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF82 | SMART:SM00320 | SUPFAM:SSF50978 |
| TIGR:TC58999 | TIGR:TC64161 | UniParc:UPI00015CB6DA | ArrayExpress:VIT_16s0013g01550 | EnsemblPlantsGene:VIT_16s0013g01550 | EnsemblPlants:VIT_16s0013g01550.t01 |
| unigene:Vvi.12356 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| RefSeq:XP_002265142 | RefSeq:XP_002265142.1 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr16:+:8370339..8376341
Molecular Weight (calculated)
48384.5 Da
IEP (calculated)
4.406
GRAVY (calculated)
-0.536
Length
424 amino acids
Sequence
(BLAST)
(BLAST)
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPPGKD YSVQKMILGT HTSENEPNYL MLAQVQLPLE DAENDARQYD
101: DDRFDVGGFG CANGKVQIIQ QINHDGEVNR ARYMPQNSFI IATKTVSAEV YVFDYSKHPS KPPLDGACSP DLRLRGHSTE GYGLSWSQFK QGHLLSGSDD
201: AQICLWDINA TPKNKALEAQ QIFKVHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRTP SVSKPIQSVI AHQSEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKINTAL HTFDCHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTPEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI ASVAEDNILQ
401: IWQMAENIYH DEDDLPGEES TKAS
101: DDRFDVGGFG CANGKVQIIQ QINHDGEVNR ARYMPQNSFI IATKTVSAEV YVFDYSKHPS KPPLDGACSP DLRLRGHSTE GYGLSWSQFK QGHLLSGSDD
201: AQICLWDINA TPKNKALEAQ QIFKVHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRTP SVSKPIQSVI AHQSEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKINTAL HTFDCHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTPEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI ASVAEDNILQ
401: IWQMAENIYH DEDDLPGEES TKAS
001: MGKDEEEMRG EIEERLINEE YKIWKKNTPF LYDLVITHAL EWPSLTVEWL PDREEPSGKD YSVQKMILGT HTSESEPNYL MLAQVQLPLD DTESEARQYD
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
101: DDRSEFGGFG CATGKVQIIQ QINHDGEVNR ARYMPQNPFI IATKTVNAEV YVFDYSKHPS KPPLDGACNP DLKLRGHSSE GYGLSWSKFK QGHLLSGSDD
201: AQICLWDINA TPKNKSLDAQ QIFKAHEGVV EDVAWHLRHE YLFGSVGDDQ YLLIWDLRSP SASKPVQSVV AHSMEVNCLA FNPFNEWVVA TGSTDKTVKL
301: FDLRKLSTAL HTFDSHKEEV FQVGWNPKNE TILASCCLGR RLMVWDLSRI DEEQTVEDAE DGPPELLFIH GGHTSKISDF SWNPCEDWVI SSVAEDNILQ
401: IWQMAENIYH DEDDAPGEEP SKAS
Arabidopsis Description
MSI1Histone-binding protein MSI1 [Source:UniProtKB/Swiss-Prot;Acc:O22467]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.