Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- golgi 1
- plasma membrane 1
- endoplasmic reticulum 1
- vacuole 1
- peroxisome 1
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH21268 | Soybean | cytosol | 69.49 | 85.22 |
| KRH11018 | Soybean | cytosol | 67.18 | 85.06 |
| PGSC0003DMT400023242 | Potato | cytosol | 66.92 | 82.59 |
| Solyc03g062940.2.1 | Tomato | cytosol | 66.41 | 81.96 |
| PGSC0003DMT400022498 | Potato | cytosol | 66.41 | 81.96 |
| CDX99799 | Canola | cytosol | 65.64 | 80.76 |
| Bra032295.1-P | Field mustard | cytosol | 65.38 | 80.44 |
| CDY43325 | Canola | cytosol | 65.38 | 80.44 |
| AT1G29260.1 | Thale cress | cytosol | 65.13 | 80.13 |
| CDY50786 | Canola | cytosol | 65.13 | 80.13 |
| Bra010844.1-P | Field mustard | cytosol | 64.87 | 79.81 |
| CDX90175 | Canola | cytosol | 64.62 | 79.5 |
| GSMUA_Achr6P14510_001 | Banana | cytosol, mitochondrion, peroxisome, plastid | 61.28 | 75.16 |
| Zm00001d016170_P001 | Maize | cytosol | 53.08 | 64.89 |
| EES04830 | Sorghum | cytosol, peroxisome, plastid | 53.33 | 64.8 |
| Os02t0245100-01 | Rice | cytosol, golgi, plastid | 52.56 | 63.66 |
| TraesCS3D01G373900.1 | Wheat | cytosol | 51.54 | 63.41 |
| GSMUA_Achr10P... | Banana | mitochondrion | 40.26 | 49.06 |
| HORVU3Hr1G082800.3 | Barley | cytosol, mitochondrion | 31.79 | 38.51 |
| VIT_03s0038g02430.t01 | Wine grape | cytosol | 18.46 | 17.96 |
| VIT_16s0013g01550.t01 | Wine grape | nucleus | 18.21 | 16.75 |
| VIT_09s0002g02150.t01 | Wine grape | nucleus | 16.67 | 14.35 |
| VIT_11s0016g02270.t01 | Wine grape | nucleus | 16.92 | 13.92 |
| VIT_11s0016g02170.t01 | Wine grape | nucleus | 16.92 | 12.99 |
Protein Annotations
| EntrezGene:100248063 | wikigene:100248063 | Gene3D:2.130.10.10 | MapMan:23.4.1.1.2 | EMBL:AM468090 | ProteinID:CAN72621 |
| ProteinID:CAN72621.1 | ProteinID:CCB55688 | ProteinID:CCB55688.1 | UniProt:F6HMA0 | EMBL:FN595992 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0006625 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016043 | InterPro:IPR001680 |
| InterPro:IPR015943 | InterPro:IPR017986 | EntrezGene:LOC100248063 | wikigene:LOC100248063 | PFAM:PF00400 | PRINTS:PR00320 |
| ScanProsite:PS00678 | PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22850 | PANTHER:PTHR22850:SF183 | SMART:SM00320 |
| SUPFAM:SSF50978 | UniParc:UPI0002107FBB | ArrayExpress:VIT_10s0003g01320 | EnsemblPlantsGene:VIT_10s0003g01320 | EnsemblPlants:VIT_10s0003g01320.t01 | unigene:Vvi.12889 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002272882 |
| RefSeq:XP_002272882.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:+:2652801..2654162
Molecular Weight (calculated)
43628.2 Da
IEP (calculated)
5.397
GRAVY (calculated)
-0.321
Length
390 amino acids
Sequence
(BLAST)
(BLAST)
001: MLVSDCCYPC KQTNISTDLG LSFPQPVQEY PDPQPGSDLP SNQTIPIDNQ KRDPKEKESE AANPNSPKPQ KTKKMPVFKT PFNGYAVKFS PFYESRLAVA
101: TAQNFGILGN GRLHVLELSP AGPISEFASF DTADGVYDVT WSESHESLLI AAVADGSVKL YDLALPPASN PVRSLQEHSR EVHSLDFNPV RRDSFLSSSW
201: DDTIKLWTLD RPTSVRTFKE HAYCVYSSVW NPRHADVFAS ASGDCTIRVW DVREPGSTMI LPAHEFEILA CDWNKYDDCV LVSASVDKSI KVWDVRNFRI
301: PVSVLNGHSY AVRKVKFSPH RRGAIASCSY DMTVCLWDYM VEDALIGRYD HHTEFAVGVD MSVLVEGLLA STGWDELVYV WQHGTDPRAP
101: TAQNFGILGN GRLHVLELSP AGPISEFASF DTADGVYDVT WSESHESLLI AAVADGSVKL YDLALPPASN PVRSLQEHSR EVHSLDFNPV RRDSFLSSSW
201: DDTIKLWTLD RPTSVRTFKE HAYCVYSSVW NPRHADVFAS ASGDCTIRVW DVREPGSTMI LPAHEFEILA CDWNKYDDCV LVSASVDKSI KVWDVRNFRI
301: PVSVLNGHSY AVRKVKFSPH RRGAIASCSY DMTVCLWDYM VEDALIGRYD HHTEFAVGVD MSVLVEGLLA STGWDELVYV WQHGTDPRAP
001: MPVFKAPFNG YSVKFSPFYE SRLAVATAQN FGILGNGRIH VLELAPGAPG VTESVSYDTA DAVYDVCWSE SHDSVLIAAI GDGSVKIYDT ALPPPSNPIR
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
101: SFQEHAREVQ SVDYNPTRRD SFLTSSWDDT VKLWAMDRPA SVRTFKEHAY CVYQAVWNPK HGDVFASASG DCTLRIWDVR EPGSTMIIPA HDFEILSCDW
201: NKYDDCILAT SSVDKTVKVW DVRSYRVPLA VLNGHGYAVR KVKFSPHRRS LIASCSYDMS VCLWDYMVED ALVGRYDHHT EFAVGIDMSV LVEGLMASTG
301: WDELVYVWQQ GMDPRAS
Arabidopsis Description
PEX7Peroxisome biogenesis protein 7 [Source:UniProtKB/Swiss-Prot;Acc:Q9XF57]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.