Factsheet for VIT_14s0066g01020.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc12g035130.1.1	Tomato	nucleus	52.61	74.18
PGSC0003DMT400080614	Potato	nucleus	52.61	74.06
Solyc02g086660.2.1	Tomato	nucleus	57.59	70.4
AT3G01540.2	Thale cress	cytosol	50.29	70.11
Bra040699.1-P	Field mustard	cytosol	49.36	69.95
Bra001004.1-P	Field mustard	cytosol	51.33	69.65
PGSC0003DMT400001391	Potato	cytosol	58.29	68.9
KRG93254	Soybean	endoplasmic reticulum	59.68	66.37
KRH56577	Soybean	nucleus	59.1	65.81
Bra023478.1-P	Field mustard	cytosol	51.33	65.53
CDX91943	Canola	cytosol	50.06	64.96
CDY28671	Canola	cytosol	49.83	64.86
CDX91036	Canola	cytosol	51.22	64.62
AT5G14610.1	Thale cress	cytosol	52.03	63.06
CDX74304	Canola	cytosol	49.94	62.65
GSMUA_Achr8P31890_001	Banana	nucleus	54.46	59.8
TraesCS3A01G130200.4	Wheat	cytosol	44.96	59.69
TraesCS3B01G149300.8	Wheat	cytosol	44.96	59.69
TraesCS3D01G131100.11	Wheat	cytosol	45.08	59.57
Zm00001d008725_P003	Maize	cytosol	47.39	59.02
CDX85591	Canola	cytosol	51.1	58.64
Zm00001d039673_P002	Maize	cytosol	46.93	57.77
OQU86230	Sorghum	cytosol	47.16	56.92
HORVU3Hr1G024610.13	Barley	cytosol, plastid	45.42	55.45
KXG32714	Sorghum	nucleus	50.75	55.37
Os01t0549400-01	Rice	nucleus	50.64	55.18
Zm00001d044510_P002	Maize	mitochondrion	50.75	54.61
Zm00001d011155_P012	Maize	nucleus	49.36	54.41
Os01t0172200-01	Rice	cytosol	47.74	54.28
TraesCS3D01G202500.3	Wheat	nucleus	49.13	52.41
TraesCS3A01G194200.1	Wheat	nucleus	47.05	51.85
TraesCS3B01G230800.1	Wheat	nucleus	47.16	51.85
VIT_09s0002g02100.t01	Wine grape	cytosol	28.62	47.96
VIT_06s0004g00850.t01	Wine grape	cytosol	18.19	41.1
VIT_05s0020g00470.t01	Wine grape	cytosol	51.68	38.68
VIT_17s0000g09130.t01	Wine grape	cytosol	23.64	33.39
VIT_13s0156g00070.t01	Wine grape	cytosol	23.64	33.06
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	23.64	32.8
VIT_11s0016g05090.t01	Wine grape	cytosol	22.71	31.97
VIT_02s0109g00380.t01	Wine grape	cytosol	22.48	30.89
VIT_06s0004g08160.t01	Wine grape	plastid	19.7	29.93
VIT_09s0002g08120.t01	Wine grape	cytosol	19.93	29.3
VIT_09s0054g01810.t01	Wine grape	cytosol	21.55	26.23
VIT_03s0038g00010.t01	Wine grape	cytosol	21.55	26.12
VIT_07s0005g01600.t01	Wine grape	cytosol	22.36	25.03
VIT_03s0038g04130.t01	Wine grape	nucleus	21.9	16.48

Protein Annotations

EntrezGene:100264477	wikigene:100264477	Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	EMBL:AM450058
ProteinID:CAN61090	ProteinID:CAN61090.1	ProteinID:CCB58502	ProteinID:CCB58502.1	InterPro:DEAD/DEAH_box_helicase_dom	UniProt:F6HUY4
EMBL:FN596252	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EntrezGene:LOC100264477	wikigene:LOC100264477	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF00397	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540
UniParc:UPI00021096E7	ArrayExpress:VIT_14s0066g01020	EnsemblPlantsGene:VIT_14s0066g01020	EnsemblPlants:VIT_14s0066g01020.t01	unigene:Vvi.13902	InterPro:WW_dom
InterPro:WW_dom_sf	RefSeq:XP_002273908	RefSeq:XP_002273908.2	RefSeq:XP_003633801	RefSeq:XP_003633801.1	SEG:seg

Description

No Description!

Coordinates

chr14:-:27450402..27458362

Molecular Weight (calculated)

94565.1 Da

IEP (calculated)

10.142

GRAVY (calculated)

-0.884

Length

863 amino acids

Sequence
(BLAST)

001: MAATATGPRY APEDPTLPKP WKGLVDGKTG YLYFWNPETN VTQYERPERP GASSNASLAP PPKSSASISS SVQVQQSSQG QRRDHGLNEE DDKYNRARNL
101: QQSARGGTVH SHDPPNGIVG AGHGGSSVRG QGSSGPGSGA STESYRRRHE ITVTGDDVPQ PFTSFESTGF PPEIIREVYS AGFSAPTPIQ AQSWPVALQS
201: RDIVAIAKTG SGKTLGYLIP GFIHLKRIRN NPQMGPTVLV LSPTRELATQ IQDEAVKFGR SSRLSCTCLY GGAPKGPQLR DLDRGADIVV ATPGRLNDIL
301: EMRRVSLRQV SYLVLDEADR MLDMGFEPQI RKIVKEVPAR RQTLMYTATW PKEVRKIAAD LLVNPVQVNI GNVDELVANK AITQYVEVLP YMEKHKRLEQ
401: ILRSQEPGSK IIIFCSTKKM CDQLARNLTR PFGAAAIHGD KSQGERDYVL NQFRTGRSPV LVATDVAARG LDIKDIRVVI NYDFPTGVED YVHRIGRTGR
501: AGATGVAYTF FAEQDAKYAS DLVKVLEGAN QRVPPEIRDM ASRGGGMGRS RRWGSGTGGR DGGRGGRNDS SYGGRDGGRG GWGMAPSSSS RLERGGGRGA
601: DQDQRDRDRY DHSYHDGHDF DTRSRYDRGY HASSIRAGER DRARSRSRSQ SPNKGQAYGD ARSRSRSRSK SRSRSRSLER YNKAPPVRER SPVHSFHKSA
701: MEQARSPHGR YVSPYNNDNV RERSPMRSFH KSAMEQKPQS SPPPQRQRVS PYNKDGTRGF TNSVNARGSS PERSQSPPGA AGVGKEKLKA SDGDGGGKDK
801: LRAPYDDTPQ DWQRSPGGGQ DVVGYANGHR ASYFGEEEEE GMIPADDDGT FQAPTADPHQ ASP

Best Arabidopsis Sequence Match ( AT5G14610.6 )
(BLAST)

001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLREVYSAG FSAPSPIQAQ SWPIAMQNRD
201: IVAIAKTGSG KTLGYLIPGF MHLQRIHNDS RMGPTILVLS PTRELATQIQ VEALKFGKSS KISCACLYGG APKGPQLKEI ERGVDIVVAT PGRLNDILEM
301: KRISLHQVSY LVLDEADRML DMGFEPQIRK IVNEVPTKRQ TLMYTATWPK EVRKIAADLL VNPAQVNIGN VDELVANKSI TQTIEVLAPM EKHSRLEQIL
401: RSQEPGSKII IFCSTKRMCD QLARNLTRTF GAAAIHGDKS QAERDDVLNQ FRSGRTPVLV ATDVAARGLD VKDIRVVVNY DFPNGVEDYV HRIGRTGRAG
501: ATGLAYTFFG DQDAKHASDL IKILEGANQK VPPQVREMAT RGGGGMNKFR RWGTPSSGGG GGRGGYGDSG YGGRGESGYG SRGDSGYGGR GDSGGRGSWA
601: PSRDSGSSGW GRERSRSPER FRGGPPSTSS PPRSFHEAMM MKNR

Arabidopsis Description

DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.