Factsheet for VIT_17s0000g09130.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P01340_001	Banana	cytosol	40.26	64.23
KRH03228	Soybean	nucleus	63.01	63.95
KRH57127	Soybean	endoplasmic reticulum, nucleus	63.34	63.24
Solyc03g112350.2.1	Tomato	nucleus	64.81	60.83
EES04084	Sorghum	cytosol	57.12	60.38
AT5G63120.2	Thale cress	cytosol	57.45	59.39
HORVU3Hr1G092600.1	Barley	cytosol	55.65	59.23
HORVU3Hr1G092610.1	Barley	cytosol	55.65	59.23
TraesCS3D01G412400.2	Wheat	cytosol	55.65	59.13
TraesCS3A01G416900.1	Wheat	cytosol	55.48	59.06
TraesCS3B01G451900.1	Wheat	cytosol	55.48	59.06
VIT_09s0002g02100.t01	Wine grape	cytosol	49.43	58.64
Bra035857.1-P	Field mustard	cytosol	56.63	58.54
CDY16735	Canola	cytosol	56.63	58.54
CDY48128	Canola	cytosol	56.79	58.42
Zm00001d042416_P002	Maize	extracellular, plasma membrane	56.46	54.08
PGSC0003DMT400046821	Potato	cytosol	62.52	53.2
VIT_06s0004g00850.t01	Wine grape	cytosol	17.51	28.01
VIT_13s0156g00070.t01	Wine grape	cytosol	27.66	27.39
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	26.84	26.37
VIT_06s0004g08160.t01	Wine grape	plastid	24.22	26.06
VIT_11s0016g05090.t01	Wine grape	cytosol	25.86	25.77
VIT_02s0109g00380.t01	Wine grape	cytosol	25.7	25.0
VIT_07s0005g01600.t01	Wine grape	cytosol	30.28	23.99
VIT_09s0002g08120.t01	Wine grape	cytosol	22.91	23.85
VIT_14s0066g01020.t01	Wine grape	cytosol	33.39	23.64
VIT_03s0038g00010.t01	Wine grape	cytosol	24.39	20.93
VIT_09s0054g01810.t01	Wine grape	cytosol	24.22	20.87
VIT_05s0020g00470.t01	Wine grape	cytosol	33.72	17.87
VIT_03s0038g04130.t01	Wine grape	nucleus	29.62	15.78

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	ProteinID:CBI14965	ProteinID:CBI14965.3	UniProt:D7SHK5	InterPro:DEAD/DEAH_box_helicase_dom
EMBL:FN594950	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003729
GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0001BE0C3D
ArrayExpress:VIT_17s0000g09130	EnsemblPlantsGene:VIT_17s0000g09130	EnsemblPlants:VIT_17s0000g09130.t01	SEG:seg	:	:

Description

No Description!

Coordinates

chr17:-:10709466..10713883

Molecular Weight (calculated)

64980.4 Da

IEP (calculated)

10.318

GRAVY (calculated)

-0.515

Length

611 amino acids

Sequence
(BLAST)

001: MNHYDLRFSD PHSYRERRSD LMVAPPPVAP PPMMGGVVGG PSPTYGRGGP ASYGGPSVSF PNGGRGGGDV SGSVPGGGGF NAYPPFQPGS GRFEIGRGGG
101: GGGGVGRGFS GGKGSGGEFG GRMANGDLGN RRGDGDRGRG GGGARGREGG RGTGDGGRRA YDSGRGGGRT GGSRSSDGGR GGGGSRTFDG GHGRGGIRSS
201: DAGRGGRSFT GGRGGGRSGF DGGRGGGRGG RHGGASRGDL DNIALPKQDF GSLVPFEKNF YIESPSVQAM SEQEAMLYRA RREITVEGYD VPKPIRHFQE
301: ANFPGYCLEV IAKLGFVEPT PIQAQGWPMA LKGRDLIGIA ETGSGKTLAY LLPALVHVSA QPPLVRGEGP IVLVLAPTRE LAVQIQEEAL KFGSFTKIRS
401: TCIYGGAPKG PQIRDLQRGV EIVIATPGRL IDMLEAQHTN LRRVTYLVLD EADRMLDMGF EPQIRKIISQ IRPDRQTLYW SATWPREVET LARQFLRNPY
501: KVIIGSQDLK ANQSIQQVVE VVTETEKYNR LIRLLKEVMD GSRILIFMET KKGCDQVTRQ MRMDGWPSLS IHGDKNQAER DWVLAEFKSG RSPIMTATDV
601: AARGLGRITV C

Best Arabidopsis Sequence Match ( AT5G63120.5 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLGRINCD TQ

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.