Factsheet for VIT_02s0109g00380.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH74291	Soybean	nucleus	65.29	76.35
KRH39630	Soybean	nucleus	64.97	75.98
Os07t0301200-01	Rice	cytosol	59.08	72.46
Zm00001d019449_P004	Maize	nucleus	57.8	71.46
EER96257	Sorghum	cytosol	58.12	71.29
TraesCS5D01G125100.1	Wheat	nucleus	57.8	67.98
HORVU5Hr1G037290.3	Barley	nucleus	57.32	67.92
TraesCS5A01G114400.1	Wheat	nucleus	57.8	67.85
CDY65864	Canola	nucleus	57.64	67.79
TraesCS5B01G120500.1	Wheat	nucleus	57.17	67.61
AT1G31970.1	Thale cress	cytosol	57.64	67.41
CDY66221	Canola	nucleus	57.32	67.16
PGSC0003DMT400024026	Potato	nucleus	59.55	67.15
Solyc08g076200.2.1	Tomato	nucleus	58.76	66.73
Bra023227.1-P	Field mustard	nucleus	57.48	66.48
CDY41747	Canola	nucleus	57.17	66.48
Bra035518.1-P	Field mustard	nucleus	56.21	65.86
GSMUA_Achr11P...	Banana	nucleus	59.08	64.3
CDX84112	Canola	nucleus	25.96	54.33
VIT_09s0002g02100.t01	Wine grape	cytosol	31.69	38.64
VIT_06s0004g00850.t01	Wine grape	cytosol	20.38	33.51
VIT_13s0156g00070.t01	Wine grape	cytosol	28.18	28.69
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	27.39	27.65
VIT_11s0016g05090.t01	Wine grape	cytosol	26.91	27.57
VIT_06s0004g08160.t01	Wine grape	plastid	24.68	27.29
VIT_03s0038g00010.t01	Wine grape	cytosol	29.14	25.7
VIT_17s0000g09130.t01	Wine grape	cytosol	25.0	25.7
VIT_09s0054g01810.t01	Wine grape	cytosol	28.98	25.67
VIT_09s0002g08120.t01	Wine grape	cytosol	23.89	25.55
VIT_14s0066g01020.t01	Wine grape	cytosol	30.89	22.48
VIT_07s0005g01600.t01	Wine grape	cytosol	27.23	22.18
VIT_05s0020g00470.t01	Wine grape	cytosol	30.73	16.74
VIT_03s0038g04130.t01	Wine grape	nucleus	28.03	15.34

Protein Annotations

EntrezGene:100247646	wikigene:100247646	Gene3D:3.40.50.300	MapMan:35.1	EMBL:AM452377	ProteinID:CAN76636
ProteinID:CAN76636.1	ProteinID:CBI23263	ProteinID:CBI23263.3	ncoils:Coil	UniProt:D7SYM6	InterPro:DEAD/DEAH_box_helicase_dom
EMBL:FN595250	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	GO:GO:0005737	GO:GO:0005829	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009987	GO:GO:0010501	GO:GO:0016740	GO:GO:0016746	GO:GO:0016787
GO:GO:0019706	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
EntrezGene:LOC100247646	wikigene:LOC100247646	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF01529
ScanProsite:PS00039	PFscan:PS50216	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF215	InterPro:Palmitoyltrfase_DHHC	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	TIGR:TC52114	UniParc:UPI0001BE2289	ArrayExpress:VIT_02s0109g00380	EnsemblPlantsGene:VIT_02s0109g00380	EnsemblPlants:VIT_02s0109g00380.t01
unigene:Vvi.715	RefSeq:XP_002274688	RefSeq:XP_002274688.1	SEG:seg	:	:

Description

S-acyltransferase [Source:UniProtKB/TrEMBL;Acc:D7SYM6]

Coordinates

chr2:-:13058240..13081615

Molecular Weight (calculated)

70415.2 Da

IEP (calculated)

8.579

GRAVY (calculated)

-0.411

Length

628 amino acids

Sequence
(BLAST)

001: MNNQFQFACN NRFFCGGRLI FGLDASIYYD IPPTKDVMIN GMVIKVKYCQ TRMLYCPPKC SHCFICNNCV DRFNHHCPWV WQVLEETVLH SEPVALQIPT
101: NREIKAEKKK KKKHKQSKIA SNEVVEIGRK KKNEDYIIEE ETEANRKRKL EETPTVTEAK KKKKEKEKKE KKEKEGEEEG LKDEDDKESR GACVAVTGKD
201: AKESKYAAFK SFAESKLPDD VLECCRNFSQ PSPIQSHAWP FLLDHRDFIG IAATGSGKTL AFGVPAMMHV LSKRKSKTSK GVNPLCLVLS PTRELAQQIS
301: DVLCEAGKHC GVKSVCLYGG TSKGPQISSL KSGVDIVIGT PGRLKDLIEM GVCCLTEVSF VVLDEADRML DMGFEPEVRS ILSQTCPARQ MVMFSATWPL
401: PVHQLAQEFM DPNPVKVVIG SEDLAANHDV MQIVEVLDDR SRDERLLTLL GKYHKSQRNR VLVFVLYKKE AARVENMLQR RGWNVVSIHG DKAQQARTAA
501: LSLFKKGSCP LMIATDVAAR GLDIPDVEVV INYSFPLTTE DYVHRIGRTG RAGKKGVAHT FFMQENKGLA GELVNVLKEA GQIVPADLLK FGTHVKKKES
601: KLYGAHFREI AADAPKSKKI TFDDSDED

Best Arabidopsis Sequence Match ( AT1G31970.1 )
(BLAST)

001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED

Arabidopsis Description

RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.