Factsheet for Bra035518.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	mitochondrion
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY41747	Canola	nucleus	96.83	96.11
Bra023227.1-P	Field mustard	nucleus	89.55	88.4
AT1G31970.1	Thale cress	cytosol	86.57	86.41
EER96257	Sorghum	cytosol	63.25	66.21
Os07t0301200-01	Rice	cytosol	63.06	66.02
Zm00001d019449_P004	Maize	nucleus	62.13	65.55
KRH74291	Soybean	nucleus	64.74	64.62
KRH39630	Soybean	nucleus	64.74	64.62
HORVU5Hr1G037290.3	Barley	nucleus	62.5	63.21
TraesCS5D01G125100.1	Wheat	nucleus	62.5	62.73
TraesCS5B01G120500.1	Wheat	nucleus	62.13	62.71
TraesCS5A01G114400.1	Wheat	nucleus	62.5	62.62
Solyc08g076200.2.1	Tomato	nucleus	62.69	60.76
PGSC0003DMT400024026	Potato	nucleus	62.87	60.5
GSMUA_Achr11P...	Banana	nucleus	63.43	58.93
VIT_02s0109g00380.t01	Wine grape	cytosol	65.86	56.21
Bra030884.1-P	Field mustard	nucleus	36.38	39.08
Bra035857.1-P	Field mustard	cytosol	36.75	33.33
Bra016869.1-P	Field mustard	cytosol, plastid	33.58	29.56
Bra040699.1-P	Field mustard	cytosol	33.58	29.56
Bra003341.1-P	Field mustard	cytosol	32.65	28.69
Bra007399.1-P	Field mustard	cytosol	32.46	28.48
Bra001004.1-P	Field mustard	cytosol	33.77	28.46
Bra023478.1-P	Field mustard	cytosol	34.51	27.37
Bra035177.1-P	Field mustard	cytosol	29.85	27.21
Bra008471.1-P	Field mustard	cytosol	28.54	27.18
Bra007402.1-P	Field mustard	cytosol	32.46	27.1
Bra003568.1-P	Field mustard	cytosol	29.85	27.07
Bra018133.1-P	Field mustard	cytosol	29.66	27.04
Bra003343.1-P	Field mustard	cytosol	32.09	26.75
Bra000447.1-P	Field mustard	cytosol	32.84	26.15
Bra004464.1-P	Field mustard	cytosol	32.84	24.04
Bra021872.1-P	Field mustard	nucleus	29.48	23.98
Bra014568.1-P	Field mustard	cytosol	29.66	23.87
Bra029779.1-P	Field mustard	nucleus	29.85	18.04
Bra001200.1-P	Field mustard	cytosol	35.26	17.97
Bra025856.1-P	Field mustard	nucleus	31.16	14.26

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra035518	EnsemblPlants:Bra035518.1	EnsemblPlants:Bra035518.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M4F368	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF215
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002546377
SEG:seg	:	:	:	:	:

Description

AT1G31970 (E=3e-229) STRS1 | STRS1 (STRESS RESPONSE SUPPRESSOR 1); ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding

Coordinates

chrA08:-:8069540..8072115

Molecular Weight (calculated)

59719.0 Da

IEP (calculated)

9.683

GRAVY (calculated)

-0.543

Length

536 amino acids

Sequence
(BLAST)

001: MSGKKQELPV SDKPLATVES PMTETIKKKK KKKSKHSEET QEVEVPQEVT NGEELSNKEK KKKKKRKREE NEMENKKKKE TDKVPEDSGV SNGGESEQKV
101: VVTGKDVEEA KYAALTCFAE SKLPENVLDC CKTFQKPSPI QSHSWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHMLKKN KKGKGTRNPT CLVLSPTREL
201: AVQISDVLSE AGEPCGLKSI CVYGGSSKRP QINAIRSGVD IVIGTPGRLR DLIDSNELRL SDVSFVVLDE ADRMLDMGFE EPVRFILSKT NKGKWLRNQQ
301: LIATWPMEVH KLAQEFMDPN PVKVVIGSVD LAANHDVLQI IEVLDDRARD QRLVALLEKY HKSQKNRVLV FALYKVEADR LERFLQTRGW KAVSIHGNKA
401: QSERTRSLAL FKEGSCPLLV ATDVAARGLD IPDVEVVINY SFPLTTEDYV HRIGRTGRAG KKGVAHTFFT QQNKGLAGEL VNVLREAKQV VPADLLKFGT
501: HVKKKESKLY GPHFKEIAAD APKAKKITFA DSDDED

Best Arabidopsis Sequence Match ( AT1G31970.1 )
(BLAST)

001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED

Arabidopsis Description

RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.