Factsheet for Bra029779.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY44720	Canola	nucleus	93.69	96.18
AT3G09620.2	Thale cress	nucleus	62.23	55.76
TraesCS2D01G149500.1	Wheat	nucleus	50.17	53.94
KRH77709	Soybean	nucleus	63.47	51.0
Os08t0159900-01	Rice	extracellular, nucleus	60.09	50.81
KRH27757	Soybean	nucleus	63.13	50.59
OQU79814	Sorghum	nucleus	56.14	50.46
Bra025856.1-P	Field mustard	nucleus	66.07	50.04
EES14596	Sorghum	nucleus	59.75	49.91
Zm00001d024533_P001	Maize	nucleus	59.41	49.48
HORVU0Hr1G020490.1	Barley	nucleus	59.19	49.25
TraesCS7B01G187000.1	Wheat	nucleus	58.96	49.2
PGSC0003DMT400011665	Potato	nucleus	61.44	48.88
TraesCS7D01G294500.1	Wheat	nucleus	56.48	48.78
TraesCS7A01G298800.3	Wheat	nucleus	58.74	48.6
VIT_03s0038g04130.t01	Wine grape	nucleus	62.57	48.39
Solyc12g098700.1.1	Tomato	nucleus	61.44	47.52
TraesCS2B01G170700.1	Wheat	nucleus	53.1	46.31
HORVU2Hr1G025790.1	Barley	nucleus	52.76	45.93
GSMUA_Achr10P...	Banana	cytosol	50.28	44.56
Bra030884.1-P	Field mustard	nucleus	22.66	40.28
Bra000447.1-P	Field mustard	cytosol	27.17	35.81
Bra035857.1-P	Field mustard	cytosol	23.22	34.86
Bra004464.1-P	Field mustard	cytosol	28.75	34.84
Bra018133.1-P	Field mustard	cytosol	20.52	30.95
Bra008471.1-P	Field mustard	cytosol	19.5	30.73
Bra016869.1-P	Field mustard	cytosol, plastid	21.08	30.71
Bra035177.1-P	Field mustard	cytosol	20.29	30.61
Bra003568.1-P	Field mustard	cytosol	20.18	30.29
Bra007399.1-P	Field mustard	cytosol	20.74	30.11
Bra003341.1-P	Field mustard	cytosol	20.63	30.0
Bra035518.1-P	Field mustard	nucleus	18.04	29.85
Bra023227.1-P	Field mustard	nucleus	18.15	29.65
Bra003343.1-P	Field mustard	cytosol	21.2	29.24
Bra007402.1-P	Field mustard	cytosol	20.97	28.97
Bra040699.1-P	Field mustard	cytosol	19.73	28.74
Bra001004.1-P	Field mustard	cytosol	19.95	27.83
Bra021872.1-P	Field mustard	nucleus	20.63	27.77
Bra014568.1-P	Field mustard	cytosol	19.39	25.83
Bra023478.1-P	Field mustard	cytosol	19.62	25.74
Bra001200.1-P	Field mustard	cytosol	20.74	17.49

Protein Annotations

MapMan:16.4.7.1.2	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra029779	EnsemblPlants:Bra029779.1	EnsemblPlants:Bra029779.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4ELV9
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF25	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002547B34	SEG:seg	:	:

Description

AT1G20920 (E=2e-226) | DEAD box RNA helicase, putative

Coordinates

chrA05:+:22301954..22304617

Molecular Weight (calculated)

100728.0 Da

IEP (calculated)

7.208

GRAVY (calculated)

-0.874

Length

887 amino acids

Sequence
(BLAST)

001: MEAKNRRDRG RDRSEERRKG KRLENNMRKR RCESVRSIDS EDERDRYVGG GQREKRKEKD KDRRRRAMEK GGKNREHERD RGQDRKRGRE GSEESGDDVK
101: RRRQEDNGEK KEAREEEVED GVKQLDEEAE KRRRRLHEWQ EMKKKKEETK SENKSWNLEG ESDDEQVPPQ TETDDAMMVD LDEEVIDPLD AFMNTMVLPE
201: VEKLSNAASP LGTVLDSNKD INKAALGWII QGEDSDSDYS ATKYDDDQPS MDKENVELMK KTKGDKLTLV DHSNIEYQPF RKNFYIQVKD ISNLTEQEVN
301: THRKELEIKV HGKDVPRPIK SWHQTGLTTR ILNTIKKLNF QKPTPVQAQA LPLIMSGRDC IGVAPTGSGK TLSFVLPMLR HINSQPPVEP GDGPIGLVMA
401: PTRELVQQIH TDIKKFAKSL SIRCVAVYGG SGVAQQISEL KRGTEIIVCT PERMIDILST NSGKVTNLQR VTFLVMDEAD RMFDMGFEPQ ITRIIQNIRP
501: DRQTVLFSAT FPRQVEALAR KVLNKPVGIQ AGGRSVVNKD ITQFVEIKLE SEKRPRLVEL IEEWYDKGKV LVFVGSQEKC DGLYNDLKNK CGYRCQSLHG
601: GKDQIHREVA VSEFKSSVCN LLVATSVAAR GLDVKEVELV VNFDAPNHYE EYVHRVGRTG RAGRKGCAVT FVSEDDARYA PDLVKALERS EQVVPDGLRA
701: MADGFMEKVR EGVEKGRGSG FGGSGFKFNE EEDVRRAAKE AQKKEDGVEE EDKSELEDEG EISQQKQKAT MVVAAMLRGC ARTQQHYEGE LEINDFPQNA
801: RWRVTRRETL GSISDWSGAA ITTRGQFFTP GRVPGHGERK LYLFIERTSE ESVKAAKGEL MRVVNDITSQ ALSLPGRSSQ HGRYSVL

Best Arabidopsis Sequence Match ( AT3G09620.2 )
(BLAST)

001: MMLEKSKSRK ENDRKDRDRS KKENGRRDTT EMRSRVKRCD SEEEERIRIR RDRKSSDFEE EEYERDSKRR GEDKGRGRRE RDRDRGKYLK RDRERREREK
101: EKGRKKQKKE RSREDCNEES DDVKCGLKRK RTERSRHGDD DVEKKTRDEQ VEDEQKQLAE EVEKRRRRVQ EWQELKRQNE EAQIESKGPE TGKAWTLDGE
201: SDDEVKSDSE MDVDRDTKLE NGGDAKMVAS ENETAVTVSE NGGDRAADED EIDPLDAFMN TMVLPEVEKL SNIVIDGILD FKMNGKETGD QAKKGFNKAA
301: LGRIIQGEDS DSDYSEPKSD DDPSLDEDDE EFMKRVKKTK AEKLSLVDHS KIEYEPFRKN FYIEVKDISR MTQDAVNAYR KELELKVHGK DVPRPIQFWH
401: QTGLTSKILD TLKKLNYEKP MPIQAQALPI IMSGRDCIGV AKTGSGKTLG FVLPMLRHIK DQPPVEAGDG PIGLVMAPTR ELVQQIYSDI RKFSKALGII
501: CVPVYGGSGV AQQISELKRG TEIVVCTPGR MIDILCTSSG KITNLRRVTY LVMDEADRMF DMGFEPQITR IVQNIRPDRQ TVLFSATFPR QVETLARKVL
601: NKPVEIQVGG RSVVNKDITQ LVEIRPESER FSRLLELLGE WYEKGKVLVF VRSQEKSISD FKSDVCNLLI ATSVAARGLD VKELELVVNF DAPNHYEDYV
701: HRVGRTGRAG RKGCAVTFIS EDDAKYAPDL VKALELSEQP VPDDVKAVAE GFMAKVKQGI EQAHGTGYGG SGFKFNEEED EVRKAAKKAQ AKEYGFEEEK
801: SDSEDENDVV RKAGGDISQQ QITLAQIAAI ASAASKAPVT ANQLLPNGGG LATEPGIPPT DGAGRVAAMI AAANVQQYLA KIQADAIPEH YEAELEINDF
901: PQNARWKVTH KETLGPISEW SGASITTRGK FYEAGRIPGP EERKLYLFVE GPTEISVKTA KAELKRVLED ITNQTFSLPG GAQSGRYSVL

Arabidopsis Description

P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LRR1]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.