Subcellular Localization
min:
: max
Winner_takes_all: extracellular, nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
extracellular:
25047395
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os08t0154200-01 | Rice | cytosol, nucleus | 18.02 | 88.32 |
| Os08t0154225-00 | Rice | cytosol | 48.24 | 85.04 |
| EES14596 | Sorghum | nucleus | 85.22 | 84.18 |
| Zm00001d024533_P001 | Maize | nucleus | 84.46 | 83.19 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 78.17 | 79.84 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 80.84 | 79.77 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 80.08 | 78.8 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 80.27 | 78.54 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 59.49 | 75.64 |
| CDY72529 | Canola | cytosol | 42.33 | 71.27 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 67.87 | 70.01 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 66.54 | 68.5 |
| AT3G09620.2 | Thale cress | nucleus | 58.82 | 62.32 |
| KRH77709 | Soybean | nucleus | 64.54 | 61.32 |
| PGSC0003DMT400011665 | Potato | nucleus | 65.01 | 61.17 |
| KRH27757 | Soybean | nucleus | 64.54 | 61.16 |
| CDY44720 | Canola | nucleus | 50.14 | 60.88 |
| Bra029779.1-P | Field mustard | nucleus | 50.81 | 60.09 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 65.49 | 59.9 |
| Solyc12g098700.1.1 | Tomato | nucleus | 65.3 | 59.72 |
| CDY41597 | Canola | nucleus | 43.66 | 59.25 |
| CDY31513 | Canola | nucleus | 61.3 | 58.14 |
| GSMUA_Achr10P... | Banana | cytosol | 55.29 | 57.94 |
| AT1G20920.3 | Thale cress | nucleus | 63.68 | 57.29 |
| Bra025856.1-P | Field mustard | nucleus | 63.87 | 57.22 |
| Os01t0197200-01 | Rice | plasma membrane | 20.02 | 42.51 |
| Os02t0150100-02 | Rice | cytosol | 16.21 | 36.96 |
| Os01t0911100-01 | Rice | nucleus, plastid | 16.78 | 36.9 |
| Os07t0301200-01 | Rice | cytosol | 17.45 | 35.74 |
| Os03t0308500-01 | Rice | mitochondrion | 25.83 | 35.19 |
| Os06t0602400-01 | Rice | nucleus, plasma membrane | 15.63 | 33.88 |
| Os06t0697200-00 | Rice | cytosol | 18.4 | 31.18 |
| Os03t0805200-01 | Rice | plastid | 18.3 | 30.14 |
| Os07t0202100-01 | Rice | nucleus | 18.3 | 30.09 |
| Os11t0599500-00 | Rice | nucleus, plasma membrane | 17.73 | 29.86 |
| Os03t0708600-02 | Rice | nucleus | 18.68 | 26.63 |
| Os01t0172200-01 | Rice | cytosol | 17.64 | 24.37 |
| Os01t0549400-01 | Rice | nucleus | 16.97 | 22.47 |
| Os02t0150000-00 | Rice | mitochondrion | 3.43 | 20.81 |
| Os01t0911000-01 | Rice | nucleus | 0.1 | 0.3 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | EntrezGene:4344716 | EMBL:AK102356 | ProteinID:BAC66730.1 | ProteinID:BAC99664.1 |
| ProteinID:BAF22959.1 | ProteinID:BAT03927.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | ProteinID:EEE68085.1 | GO:GO:0000166 |
| GO:GO:0000398 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009987 | GO:GO:0010468 | GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | EnsemblPlantsGene:Os08g0159900 | EnsemblPlants:Os08t0159900-01 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | UniProt:Q84UQ1 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000017D1D3 | RefSeq:XP_015650120.1 | SEG:seg | : |
Description
Pre-mRNA-processing ATP-dependent RNA helicase PRP5, RNA helicase 42DEAD-like helicase, N-terminal domain containing protein. (Os08t0159900-01);Hypothetical conserved gene. (Os08t0159900-02)
Coordinates
chr8:-:3514899..3518732
Molecular Weight (calculated)
117738.0 Da
IEP (calculated)
5.902
GRAVY (calculated)
-0.924
Length
1049 amino acids
Sequence
(BLAST)
(BLAST)
0001: MGSSDEAGSS KHHRRDKEKD RERSSSRHHR DRDRERSSSR HHHREDRDDD RDRDRDRERR HREKERDREE RKAREREERE KEKERERARR REERDREERS
0101: RRREAAAEEE EEDVDRDRKR RRRSSHHHHH HRDAEPEGPA SGAREEEVVD VEEAERRRQK KKEEEQKQLD EEMETRRRRI KEWQEMKRRE EETKRREQEE
0201: AGVGTSAAAA AAPAEAEDGG NAGKKWTLDG EESDEEGNQE DGKKSDDNGG SGAGAMDVDV PNGGDNANGA NAMDEDEIDP LDAFMNSMVL PEVAKLESMP
0301: AANVDDKNDK SAKDAVTNGD KKGPKKVMGR IIQGEDSDSD YADDEDDEGG SEDEDDEEFM KRVKKTKAEK LAIVDHSKID YQPFRKNFYI EVKDITKMAA
0401: EEVAAYRKQL ELKVHGKDVP KPIKTWVQSG LTSKLLDTIK KLGFEKPMSI QAQALPIIMS GRDCIGIAKT GSGKTLAFVL PMLRHVKDQP AVVPGDGPIG
0501: LIMAPTRELV VQIHSDIKKF SKALGINCVA IYGGSGVAQQ ISELKRGAEI VVCTPGRMID ILCTSSGKIT NLRRVTFLVM DEADRMFDMG FEPQITRIVQ
0601: NTRPDRQTVL FSATFPRQVE ILARKVLTKP VEIQVGGRSV VNKDITQLVE VRPENERFFR LLELLGEWFD KGKILVFVHS QDKCDSLLKD LFQHGYPCLS
0701: LHGGKDQTDR ESTLADFKSN VCSLLIATSV AARGLDVKEL ELVVNYDVPN HYEDYVHRVG RTGRAGRKGF AVTFISEEEE RYAPDLVKAL ELSEQAVPED
0801: LKGLADRFMA KVKQGTEQAH GTGYGGSGFK FNEEEDEARK SAKKAQAREY GYEEDKSDSD SDEEGGVRKA GGDLAAQAIA AAQAAAAMVA AKAASNANQQ
0901: TQGTSVGPLL PLAIASNTQN NEATARALQA AFNIQQNLAR IQAHAVPEHY EAELEINDFP QNARWKITHK ETLGPIQEWT GAAITTRGTF FPQGKIVGAN
1001: ERKLYLFIEG PTELSVKKAK AELKRVLEDC ANHALNLPGS AQTGKYSVI
0101: RRREAAAEEE EEDVDRDRKR RRRSSHHHHH HRDAEPEGPA SGAREEEVVD VEEAERRRQK KKEEEQKQLD EEMETRRRRI KEWQEMKRRE EETKRREQEE
0201: AGVGTSAAAA AAPAEAEDGG NAGKKWTLDG EESDEEGNQE DGKKSDDNGG SGAGAMDVDV PNGGDNANGA NAMDEDEIDP LDAFMNSMVL PEVAKLESMP
0301: AANVDDKNDK SAKDAVTNGD KKGPKKVMGR IIQGEDSDSD YADDEDDEGG SEDEDDEEFM KRVKKTKAEK LAIVDHSKID YQPFRKNFYI EVKDITKMAA
0401: EEVAAYRKQL ELKVHGKDVP KPIKTWVQSG LTSKLLDTIK KLGFEKPMSI QAQALPIIMS GRDCIGIAKT GSGKTLAFVL PMLRHVKDQP AVVPGDGPIG
0501: LIMAPTRELV VQIHSDIKKF SKALGINCVA IYGGSGVAQQ ISELKRGAEI VVCTPGRMID ILCTSSGKIT NLRRVTFLVM DEADRMFDMG FEPQITRIVQ
0601: NTRPDRQTVL FSATFPRQVE ILARKVLTKP VEIQVGGRSV VNKDITQLVE VRPENERFFR LLELLGEWFD KGKILVFVHS QDKCDSLLKD LFQHGYPCLS
0701: LHGGKDQTDR ESTLADFKSN VCSLLIATSV AARGLDVKEL ELVVNYDVPN HYEDYVHRVG RTGRAGRKGF AVTFISEEEE RYAPDLVKAL ELSEQAVPED
0801: LKGLADRFMA KVKQGTEQAH GTGYGGSGFK FNEEEDEARK SAKKAQAREY GYEEDKSDSD SDEEGGVRKA GGDLAAQAIA AAQAAAAMVA AKAASNANQQ
0901: TQGTSVGPLL PLAIASNTQN NEATARALQA AFNIQQNLAR IQAHAVPEHY EAELEINDFP QNARWKITHK ETLGPIQEWT GAAITTRGTF FPQGKIVGAN
1001: ERKLYLFIEG PTELSVKKAK AELKRVLEDC ANHALNLPGS AQTGKYSVI
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.