Factsheet for Os01t0172200-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G130200.4	Wheat	cytosol	67.33	78.62
TraesCS3B01G149300.8	Wheat	cytosol	67.19	78.46
TraesCS3D01G131100.11	Wheat	cytosol	67.06	77.95
Zm00001d008725_P003	Maize	cytosol	70.62	77.34
Zm00001d039673_P002	Maize	cytosol	70.49	76.32
OQU86230	Sorghum	cytosol	71.54	75.94
HORVU3Hr1G024610.13	Barley	cytosol, plastid	67.72	72.7
AT3G01540.2	Thale cress	cytosol	51.65	63.33
Bra001004.1-P	Field mustard	cytosol	52.31	62.42
Bra040699.1-P	Field mustard	cytosol	49.54	61.74
Solyc12g035130.1.1	Tomato	nucleus	49.54	61.44
PGSC0003DMT400080614	Potato	nucleus	49.54	61.34
Bra023478.1-P	Field mustard	cytosol	52.96	59.47
CDX91036	Canola	cytosol	52.83	58.63
CDX91943	Canola	cytosol	50.59	57.74
CDY28671	Canola	cytosol	49.8	57.01
Solyc02g086660.2.1	Tomato	nucleus	52.31	56.23
CDX74304	Canola	cytosol	50.72	55.96
AT5G14610.1	Thale cress	cytosol	52.17	55.62
PGSC0003DMT400001391	Potato	cytosol	52.17	54.25
KRH56577	Soybean	nucleus	54.68	53.55
KRG93254	Soybean	endoplasmic reticulum	54.68	53.48
CDX85591	Canola	cytosol	52.7	53.19
Os01t0549400-01	Rice	nucleus	52.7	50.51
Os01t0197200-01	Rice	plasma membrane	31.88	48.99
VIT_14s0066g01020.t01	Wine grape	cytosol	54.28	47.74
Os01t0911100-01	Rice	nucleus, plastid	25.96	41.3
Os06t0602400-01	Rice	nucleus, plasma membrane	24.77	38.84
Os07t0301200-01	Rice	cytosol	24.51	36.33
Os11t0599500-00	Rice	nucleus, plasma membrane	27.14	33.07
Os02t0150100-02	Rice	cytosol	19.89	32.83
Os03t0805200-01	Rice	plastid	27.4	32.65
Os07t0202100-01	Rice	nucleus	27.14	32.29
Os06t0697200-00	Rice	cytosol	20.69	25.36
Os03t0308500-01	Rice	mitochondrion	25.16	24.81
Os02t0150000-00	Rice	mitochondrion	5.53	24.28
Os03t0708600-02	Rice	nucleus	23.19	23.91
Os08t0154225-00	Rice	cytosol	18.05	23.03
Os08t0159900-01	Rice	extracellular, nucleus	24.37	17.64
Os08t0154200-01	Rice	cytosol, nucleus	0.79	2.8
Os01t0911000-01	Rice	nucleus	0.53	1.19

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EntrezGene:4327645	EMBL:AK100326	UniProt:B7EQA6	ProteinID:BAD68263.1
ProteinID:BAS70632.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0000184	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005730
GO:GO:0005737	GO:GO:0006139	GO:GO:0006364	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0010501	GO:GO:0016787	GO:GO:0042254	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlantsGene:Os01g0172200	EnsemblPlants:Os01t0172200-01
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS50020	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00456	SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	UniParc:UPI0000457DF0
InterPro:WW_dom	InterPro:WW_dom_sf	RefSeq:XP_015621419.1	SEG:seg	:	:

Description

RNA helicase 14DNA/RNA helicase, DEAD/DEAH box type, N-terminal domain containing protein. (Os01t0172200-01)

Coordinates

chr1:-:3713740..3718631

Molecular Weight (calculated)

83304.9 Da

IEP (calculated)

9.532

GRAVY (calculated)

-0.643

Length

759 amino acids

Sequence
(BLAST)

001: MASAAAAAAT ARGPRYAPPD PTLPKPWRGL IDGNTGYLYF WNPETKAVQY DRPTAPPPSS PPAQQPPERP RNSDPAESQA QAGASRTQNA APADDRARND
101: HLNDHFERRT EAAGSHAQNV PFTEQNTRSN PSSQPCSAAG VYPAQNVFSE AASGDRTSPE AYRAKHEITI VGNEAPAPFM TFQSTGFPPE ILREVSAHNL
201: HDYLMHFLVS FSKEIRRSLC VHTTYVITTL DVHLSRLFKS TIYVKVQQAG FSAPTPIQAQ SWPIALRNRD IVAVAKTGSG KTLGYLIPGF ILLKRLQHNS
301: RDGPTVLVLS PTRELATQIQ DEAKKFGRSS RISSVCLYGG APKGPQLRDL ERGADIVVAT PGRLNDILEM RRVSLHQVSY LVLDEADRML DMGFEPQIRK
401: IVKQVQPKRQ TLMFTATWPK EVRKIASDLL SNPVQVNIGN TDQLVANKSI TQYVDVITPP EKSRRLDQIL RSQEPGSKII IFCSTKRMCD QLARNLARQY
501: GASAIHGDKS QAERDSVLSE FRSGRCPILV ATDVAARGLD IKDIRVVVNY DFPTGVEDYV HRIGRTGRAG ATGVAYTFFC DQDSKYASDL VKILEGANQS
601: VSQQLRDMVS RGGYGGRSRR WASSDDSYGG RGYDSGYTSR STDNYNSGYG SQSGNGSSFH SSFHNSNSGN QFGDTSGFQT SFHNSSSNNQ TSDNPSFHAS
701: SNNDQPGDGL SFHARFYSSS RGSDQSRTNN AGFRDRSRSP PSNRNHEDPG SKAVGVSNW

Best Arabidopsis Sequence Match ( AT5G14610.1 )
(BLAST)

001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLRECPNFM PYALSFVPGA IFALGGANVV
201: RCATSLGFLQ IIWSALFGGP NFLRCPPAAG FNSYLVLPAN GRMVYSAGFS APSPIQAQSW PIAMQNRDIV AIAKTGSGKT LGYLIPGFMH LQRIHNDSRM
301: GPTILVLSPT RELATQIQVE ALKFGKSSKI SCACLYGGAP KGPQLKEIER GVDIVVATPG RLNDILEMKR ISLHQVSYLV LDEADRMLDM GFEPQIRKIV
401: NEVPTKRQTL MYTATWPKEV RKIAADLLVN PAQVNIGNVD ELVANKSITQ TIEVLAPMEK HSRLEQILRS QEPGSKIIIF CSTKRMCDQL ARNLTRTFGA
501: AAIHGDKSQA ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK ILEGANQKVP
601: PQVREMATRG GGGMNKFRRW GTPSSGGGGG RGGYGDSGYG GRGESGYGSR GDSGYGGRGD SGGRGSWAPS RDSGSSGWGR ERSRSPERFR GGPPSTSSPP
701: RSFHEAMMMK NR

Arabidopsis Description

DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.