Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra023478.1-P | Field mustard | cytosol | 86.97 | 96.75 |
| CDX91036 | Canola | cytosol | 87.77 | 96.49 |
| CDX91039 | Canola | cytosol | 22.21 | 95.43 |
| CDX91037 | Canola | cytosol | 22.21 | 95.43 |
| AT5G14610.1 | Thale cress | cytosol | 80.98 | 85.53 |
| CDY28671 | Canola | cytosol | 65.96 | 74.81 |
| CDX91943 | Canola | cytosol | 65.56 | 74.14 |
| CDX74304 | Canola | cytosol | 65.96 | 72.09 |
| PGSC0003DMT400080614 | Potato | nucleus | 53.99 | 66.23 |
| Solyc12g035130.1.1 | Tomato | nucleus | 53.46 | 65.69 |
| Solyc02g086660.2.1 | Tomato | nucleus | 57.58 | 61.33 |
| KRH56577 | Soybean | nucleus | 62.5 | 60.65 |
| KRG93254 | Soybean | endoplasmic reticulum | 62.5 | 60.57 |
| PGSC0003DMT400001391 | Potato | cytosol | 57.71 | 59.45 |
| TraesCS3B01G149300.8 | Wheat | cytosol | 49.6 | 57.38 |
| TraesCS3A01G130200.4 | Wheat | cytosol | 49.47 | 57.23 |
| TraesCS3D01G131100.11 | Wheat | cytosol | 49.6 | 57.12 |
| Zm00001d008725_P003 | Maize | cytosol | 52.53 | 57.0 |
| Zm00001d039673_P002 | Maize | cytosol | 51.33 | 55.06 |
| OQU86230 | Sorghum | cytosol | 51.86 | 54.55 |
| HORVU3Hr1G024610.13 | Barley | cytosol, plastid | 50.13 | 53.32 |
| Os01t0172200-01 | Rice | cytosol | 53.19 | 52.7 |
| Zm00001d011155_P012 | Maize | nucleus | 53.32 | 51.21 |
| VIT_14s0066g01020.t01 | Wine grape | cytosol | 58.64 | 51.1 |
| KXG32714 | Sorghum | nucleus | 53.19 | 50.57 |
| GSMUA_Achr8P31890_001 | Banana | nucleus | 51.86 | 49.62 |
| Zm00001d044510_P002 | Maize | mitochondrion | 52.53 | 49.25 |
| Os01t0549400-01 | Rice | nucleus | 51.6 | 48.99 |
| TraesCS3D01G202500.3 | Wheat | nucleus | 50.4 | 46.85 |
| TraesCS3A01G194200.1 | Wheat | nucleus | 48.27 | 46.36 |
| TraesCS3B01G230800.1 | Wheat | nucleus | 47.87 | 45.86 |
| CDY10596 | Canola | nucleus | 29.92 | 45.09 |
| CDY02459 | Canola | cytosol | 29.79 | 44.89 |
| CDY47978 | Canola | plastid | 23.94 | 43.06 |
| CDY16735 | Canola | cytosol | 31.65 | 40.27 |
| CDY48128 | Canola | cytosol | 31.78 | 40.24 |
| CDX98304 | Canola | cytosol, plastid | 24.34 | 39.7 |
| CDX74101 | Canola | cytosol | 45.08 | 38.7 |
| CDY08048 | Canola | nucleus | 44.95 | 38.41 |
| CDX84672 | Canola | cytosol | 21.14 | 35.57 |
| CDY41747 | Canola | nucleus | 24.73 | 34.44 |
| CDX67749 | Canola | cytosol | 27.26 | 34.05 |
| CDX71948 | Canola | cytosol | 26.99 | 34.0 |
| CDY66221 | Canola | nucleus | 24.2 | 33.96 |
| CDY06034 | Canola | cytosol | 25.8 | 33.74 |
| CDY65864 | Canola | nucleus | 23.94 | 33.71 |
| CDY14843 | Canola | cytosol, plastid | 27.39 | 33.66 |
| CDX98301 | Canola | cytosol | 26.86 | 33.61 |
| CDY49232 | Canola | cytosol | 27.93 | 33.6 |
| CDX67752 | Canola | cytosol | 28.06 | 33.33 |
| CDX71944 | Canola | cytosol | 27.79 | 32.97 |
| CDX84112 | Canola | nucleus | 12.5 | 31.33 |
| CDX67949 | Canola | cytosol | 21.28 | 29.41 |
| CDY38671 | Canola | cytosol | 20.21 | 29.29 |
| CDY61276 | Canola | cytosol | 20.21 | 29.29 |
| CDX87315 | Canola | cytosol | 20.08 | 29.15 |
| CDY39973 | Canola | cytosol | 19.81 | 28.76 |
| CDX83333 | Canola | nucleus | 24.07 | 28.41 |
| CDY53786 | Canola | nucleus | 21.81 | 27.8 |
| CDY37696 | Canola | nucleus | 21.68 | 27.63 |
| CDX88990 | Canola | cytosol, plastid | 20.21 | 27.24 |
| CDY72529 | Canola | cytosol | 21.94 | 26.48 |
| CDX80096 | Canola | cytosol | 24.87 | 25.69 |
| CDY37796 | Canola | cytosol | 25.0 | 25.61 |
| CDX95719 | Canola | cytosol | 24.87 | 25.44 |
| CDX79541 | Canola | nucleus | 20.88 | 24.96 |
| CDX79384 | Canola | cytosol | 11.3 | 21.79 |
| CDY44720 | Canola | nucleus | 23.67 | 20.6 |
| CDY41597 | Canola | nucleus | 21.01 | 20.44 |
| CDY00570 | Canola | nucleus | 15.03 | 18.62 |
| CDY31513 | Canola | nucleus | 23.94 | 16.27 |
Protein Annotations
| Gene3D:2.20.70.10 | Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078D8L9 | EnsemblPlants:CDX85591 | ProteinID:CDX85591 |
| ProteinID:CDX85591.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005524 | EnsemblPlantsGene:GSBRNA2T00143314001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C |
| InterPro:IPR001202 | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PFAM:PF00397 | ScanProsite:PS00039 | ScanProsite:PS01159 | PFscan:PS50020 | PFscan:PS51192 | PFscan:PS51194 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF255 | InterPro:RNA-helicase_DEAD-box_CS | SMART:SM00456 | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF51045 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI0004EED270 | InterPro:WW_dom | InterPro:WW_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
BnaA02g02220D
Coordinates
chrLK031842:-:804860..808710
Molecular Weight (calculated)
80315.2 Da
IEP (calculated)
10.134
GRAVY (calculated)
-0.448
Length
752 amino acids
Sequence
(BLAST)
(BLAST)
001: MAATATASTI RYAPEDPNLP KPWKGLVDSR TGYLYFWNPE TNVTQYERPP GLAPPKPSPA PPVSSSVQAQ QQPSSGFSSG KDEDKYTKGS DGPKTDSGSR
101: FSEASRSGPV NSSNAASGLG NASSGGSSAV VPPPSAAAIE KMSPEAYCRR HEITVTGGQV PPPLMSFEAT GFPPELLRES HNITPRALSF CPPGAIFALG
201: GANVVHCATS LGSLQIIWRA LFGGPNILVR TFILTPKARG RTFLIVFLFF FFQLYGAGFS APSPIQAQSW PVAMQNRDIV AVAKTGSGKT LGYLIPGFMH
301: LQRVRNDSRM GPTILVLSPT RELATQIQAE ALKFGKSSRI SCACLYGGAP KGPQLKEIER GVDIVIATPG RLNDILEMKR ISLHQVSYLV LDEADRMLDM
401: GFEPQIRKIV NEVPTKRQTL MYTATWPKEV RKIASDLLSS PAQVNIGNVD ELVANKSITQ TIEVIPPMEK QRRLEQILRS QEPGSKIIIF CSTKRMCDTL
501: ARNLTRTFGA NAIHGDKSQQ ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK
601: ILEGASQKVP QEVRELATRG GGMNKFRRWG TPSGGGGGGG GYGDSGYGGR GGGRGDSGYG GRGDSGYGGR GGSSYGGRGD SGYGGRGDSG YGGRGGSGYG
701: GRGGGDSRDS GRGSGWGRER SRSPERFNRA AAGPSTSSPP RSFHEAMMMR QK
101: FSEASRSGPV NSSNAASGLG NASSGGSSAV VPPPSAAAIE KMSPEAYCRR HEITVTGGQV PPPLMSFEAT GFPPELLRES HNITPRALSF CPPGAIFALG
201: GANVVHCATS LGSLQIIWRA LFGGPNILVR TFILTPKARG RTFLIVFLFF FFQLYGAGFS APSPIQAQSW PVAMQNRDIV AVAKTGSGKT LGYLIPGFMH
301: LQRVRNDSRM GPTILVLSPT RELATQIQAE ALKFGKSSRI SCACLYGGAP KGPQLKEIER GVDIVIATPG RLNDILEMKR ISLHQVSYLV LDEADRMLDM
401: GFEPQIRKIV NEVPTKRQTL MYTATWPKEV RKIASDLLSS PAQVNIGNVD ELVANKSITQ TIEVIPPMEK QRRLEQILRS QEPGSKIIIF CSTKRMCDTL
501: ARNLTRTFGA NAIHGDKSQQ ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK
601: ILEGASQKVP QEVRELATRG GGMNKFRRWG TPSGGGGGGG GYGDSGYGGR GGGRGDSGYG GRGDSGYGGR GGSSYGGRGD SGYGGRGDSG YGGRGGSGYG
701: GRGGGDSRDS GRGSGWGRER SRSPERFNRA AAGPSTSSPP RSFHEAMMMR QK
001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLRECPNFM PYALSFVPGA IFALGGANVV
201: RCATSLGFLQ IIWSALFGGP NFLRCPPAAG FNSYLVLPAN GRMVYSAGFS APSPIQAQSW PIAMQNRDIV AIAKTGSGKT LGYLIPGFMH LQRIHNDSRM
301: GPTILVLSPT RELATQIQVE ALKFGKSSKI SCACLYGGAP KGPQLKEIER GVDIVVATPG RLNDILEMKR ISLHQVSYLV LDEADRMLDM GFEPQIRKIV
401: NEVPTKRQTL MYTATWPKEV RKIAADLLVN PAQVNIGNVD ELVANKSITQ TIEVLAPMEK HSRLEQILRS QEPGSKIIIF CSTKRMCDQL ARNLTRTFGA
501: AAIHGDKSQA ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK ILEGANQKVP
601: PQVREMATRG GGGMNKFRRW GTPSSGGGGG RGGYGDSGYG GRGESGYGSR GDSGYGGRGD SGGRGSWAPS RDSGSSGWGR ERSRSPERFR GGPPSTSSPP
701: RSFHEAMMMK NR
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLRECPNFM PYALSFVPGA IFALGGANVV
201: RCATSLGFLQ IIWSALFGGP NFLRCPPAAG FNSYLVLPAN GRMVYSAGFS APSPIQAQSW PIAMQNRDIV AIAKTGSGKT LGYLIPGFMH LQRIHNDSRM
301: GPTILVLSPT RELATQIQVE ALKFGKSSKI SCACLYGGAP KGPQLKEIER GVDIVVATPG RLNDILEMKR ISLHQVSYLV LDEADRMLDM GFEPQIRKIV
401: NEVPTKRQTL MYTATWPKEV RKIAADLLVN PAQVNIGNVD ELVANKSITQ TIEVLAPMEK HSRLEQILRS QEPGSKIIIF CSTKRMCDQL ARNLTRTFGA
501: AAIHGDKSQA ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK ILEGANQKVP
601: PQVREMATRG GGGMNKFRRW GTPSSGGGGG RGGYGDSGYG GRGESGYGSR GDSGYGGRGD SGGRGSWAPS RDSGSSGWGR ERSRSPERFR GGPPSTSSPP
701: RSFHEAMMMK NR
Arabidopsis Description
DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.