Factsheet for TraesCS3A01G194200.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G230800.1	Wheat	nucleus	97.96	97.71
TraesCS3D01G202500.3	Wheat	nucleus	97.7	94.56
Os01t0549400-01	Rice	nucleus	76.88	76.01
KXG32714	Sorghum	nucleus	76.76	75.98
Zm00001d044510_P002	Maize	mitochondrion	76.37	74.56
Zm00001d011155_P012	Maize	nucleus	72.41	72.41
Bra040699.1-P	Field mustard	cytosol	45.21	58.13
Bra001004.1-P	Field mustard	cytosol	47.13	58.02
AT3G01540.2	Thale cress	cytosol	45.72	57.84
PGSC0003DMT400080614	Potato	nucleus	45.21	57.75
Solyc12g035130.1.1	Tomato	nucleus	44.44	56.86
CDX91943	Canola	cytosol	46.23	54.44
Bra023478.1-P	Field mustard	cytosol	46.49	53.85
Solyc02g086660.2.1	Tomato	nucleus	48.28	53.54
TraesCS3A01G130200.4	Wheat	cytosol	44.44	53.54
CDY28671	Canola	cytosol	45.21	53.39
CDX74304	Canola	cytosol	46.49	52.91
GSMUA_Achr8P31890_001	Banana	nucleus	53.0	52.8
CDX91036	Canola	cytosol	45.98	52.63
PGSC0003DMT400001391	Potato	cytosol	48.79	52.33
KRG93254	Soybean	endoplasmic reticulum	51.47	51.93
KRH56577	Soybean	nucleus	51.34	51.87
AT5G14610.1	Thale cress	cytosol	45.85	50.42
CDX85591	Canola	cytosol	46.36	48.27
VIT_14s0066g01020.t01	Wine grape	cytosol	51.85	47.05
TraesCS3A01G103700.1	Wheat	cytosol	29.76	46.98
TraesCS3A01G416900.1	Wheat	cytosol	29.12	39.72
TraesCS5A01G114400.1	Wheat	nucleus	22.35	32.71
TraesCS5A01G454600.1	Wheat	golgi	24.9	30.66
TraesCS3A01G100200.1	Wheat	cytosol	48.4	28.41
TraesCS4A01G141400.1	Wheat	plastid	23.75	28.35
TraesCS7A01G374000.1	Wheat	nucleus	24.9	27.58
TraesCS5A01G153700.1	Wheat	cytosol	19.92	26.76
TraesCS1A01G415500.1	Wheat	cytosol	21.07	25.62
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	21.07	25.08
TraesCS4A01G270200.1	Wheat	nucleus	22.73	24.48
TraesCS4A01G121700.1	Wheat	mitochondrion	23.37	23.86
TraesCS7A01G298800.3	Wheat	nucleus	23.12	16.88

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF358	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456
SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3A01G194200	EnsemblPlants:TraesCS3A01G194200.1
InterPro:WW_dom	InterPro:WW_dom_sf	TIGR:cd00079	TIGR:cd00201	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr3A:+:269391723..269396147

Molecular Weight (calculated)

87198.1 Da

IEP (calculated)

10.479

GRAVY (calculated)

-0.978

Length

783 amino acids

Sequence
(BLAST)

001: MSGTAAPRYA PDDPTVPKPW RGLVDGTTGY LYYWNPDTNV TQYEKPVPPE AQLPPPPPLP PPPPRARGRD RRDRSRSRSR SRSRTPPRRE HRDHDRDRDR
101: RRHDEHDSFK SSSSHHHLPP AATIIPTAAA DDPSAEAYRR RHEITVIGDN VPAPITEFDS GVIPLDILKE IQRAGFPSPT PIQAQSWPIA LLNQDVVAIA
201: KTGSGKTLGE LATQILDEAV KFGRSSRISS TCLYGGAPKG PQLRDLERGV DVVVATPGRL NDILEMRKIS LKQVSYLVLD EADRMLDMGF EPQIRKIVRD
301: IPSGRQTLMY TATWPKEVRR IADELLVHPV QVTIGSVDEL VANKAITQHV EVVTPSEKLR RLEQILRSHD SGSKILIFCT TKRMCDQLSR TLNRQFGAAA
401: IHGDKSQNER EKVLSQFRSG RSPILVATDV AARGLDIKDI RVVINYDFPT GVEDYVHRIG RTGRAGATGL AYTFLCDQDS KYAADLIKIL EGADQDVPPE
501: LLDMVSRGGR GRKRNKWATR SERGGGSRSE LDSRYGGRLE GSRGGRGKDD YGGRGRNDYG GSRRSARGRS RSLSRSDSDR RSPSPKRRRH DVQASRSRTR
601: SRSRSRSRSR SRNKSRNRSR SRSYTRNRRA SRSRSRSPGA RRKTERRAGS GSTRPDSAHP VEKKSSPNAH PSNDHKSRSV DPSNDYQAED GKMGKVDLDR
701: SPSLQEQDDK SAPYSPVYNG EGGRGSMSPN GEPVVDAKPV EVFVSSKKRE DEEEGMIDEE GEEGMIADDD PRAIAAVQNG DDK

Best Arabidopsis Sequence Match ( AT3G01540.1 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDRSSNGW GRERERSRSP ERFNRAPPPS
601: STGSPPRSFH ETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.