Factsheet for TraesCS5A01G153700.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G159000.1	Wheat	cytosol	96.57	92.6
TraesCS5B01G152200.1	Wheat	cytosol	95.88	91.79
HORVU5Hr1G048040.1	Barley	plastid	88.68	90.38
Os02t0150100-02	Rice	cytosol	67.58	85.65
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	87.31	77.36
EER92293	Sorghum	cytosol	80.62	76.05
Zm00001d047502_P001	Maize	extracellular	80.45	75.89
CDX87315	Canola	cytosol	66.04	74.32
CDY61276	Canola	cytosol	65.69	73.8
CDY39973	Canola	cytosol	65.52	73.75
CDY38671	Canola	cytosol	65.35	73.41
KRH68534	Soybean	cytosol	72.56	72.06
VIT_09s0002g08120.t01	Wine grape	cytosol	72.21	71.72
KRG94409	Soybean	cytosol	72.21	71.6
PGSC0003DMT400036663	Potato	cytosol	72.21	71.48
Solyc03g117440.2.1	Tomato	cytosol, nucleus	72.04	70.59
PGSC0003DMT400073340	Potato	cytosol	71.18	70.46
Bra018133.1-P	Field mustard	cytosol	71.01	70.41
GSMUA_Achr2P09160_001	Banana	cytosol	66.04	70.38
Solyc06g068280.2.1	Tomato	extracellular, nucleus	71.36	69.92
Bra008471.1-P	Field mustard	cytosol	67.41	69.8
Bra035177.1-P	Field mustard	cytosol	70.15	69.56
AT4G33370.1	Thale cress	cytosol	64.67	69.56
CDX67949	Canola	cytosol	64.67	69.3
AT5G51280.1	Thale cress	cytosol	69.13	68.19
Bra003568.1-P	Field mustard	cytosol	67.58	66.67
GSMUA_Achr1P13820_001	Banana	mitochondrion	59.52	64.02
CDX79384	Canola	cytosol	40.65	60.77
TraesCS3A01G103700.1	Wheat	cytosol	28.64	33.67
TraesCS3A01G416900.1	Wheat	cytosol	28.64	29.09
TraesCS5A01G114400.1	Wheat	nucleus	26.59	28.97
TraesCS5A01G454600.1	Wheat	golgi	27.62	25.31
TraesCS1A01G415500.1	Wheat	cytosol	27.62	25.0
TraesCS3A01G130200.4	Wheat	cytosol	27.79	24.92
TraesCS4A01G141400.1	Wheat	plastid	27.79	24.7
TraesCS4A01G121700.1	Wheat	mitochondrion	32.25	24.51
TraesCS7A01G374000.1	Wheat	nucleus	27.79	22.91
TraesCS4A01G270200.1	Wheat	nucleus	28.3	22.7
TraesCS3A01G194200.1	Wheat	nucleus	26.76	19.92
TraesCS7A01G298800.3	Wheat	nucleus	30.19	16.42
TraesCS3A01G100200.1	Wheat	cytosol	28.47	12.44

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0008270	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5A01G153700
EnsemblPlants:TraesCS5A01G153700.1	InterPro:Znf_CCHC	TIGR:cd00079	TIGR:cd00268	SEG:seg	:

Description

No Description!

Coordinates

chr5A:+:331112934..331115768

Molecular Weight (calculated)

64907.2 Da

IEP (calculated)

7.498

GRAVY (calculated)

-0.240

Length

583 amino acids

Sequence
(BLAST)

001: MAAAAAANSD DEDNYEEYVP VAKHRAMEAD RFRHQRLPKP AVPSLPPPPP PPTNNSAPAA KPSLLVTCTL RKRTAPEITP TERLIQEEQK IAEEVSYRTT
101: LKPVGEIAKD ITYTEPLRTG WKPPLRLRRM PREKADELRS KWHILVEGEE VPPPARDFCD LRFPEPISRM LREKGIVQPT PIQVQGLPVA LSGRDMIGIA
201: FTGSGKTLVF VLPLIMVALQ EEMLMPIVPG EGPFGMIICP SRELAKQTYD VIDMFLAPLK QAGFPEIRPL LCIGGVDMRT QLDVVRKGVH IVVATPGRLK
301: DLLAKKKMNL DNCRYVTLDE ADRLVDLEFE DDIREILNHF KVKDNFKAPR QTLLFSATMP KKIQNFAMSA LVKPVVVNVG RAGAANLDVI QEVEYVKEDA
401: RIIYLLECLQ KTPPPAIIFC ENKADVGYIH EYLLLKGVET VAIHGGKDQE ERQSAIEFFK NGKKDVLVAT DVASKGLDFP DIQHVINYDM PAEIENYVHR
501: IGRTGRYGKT GIATTFINKN QTETTLLDLK HLLKEAKQRI PPVLAELVDP LEDAEAIAKA SGVKGCASCG GLGHRIADCP KLR

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.