Factsheet for TraesCS5D01G159000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G153700.1	Wheat	cytosol	92.6	96.57
TraesCS5B01G152200.1	Wheat	cytosol	96.38	96.22
HORVU5Hr1G048040.1	Barley	plastid	89.14	94.76
Os02t0150100-02	Rice	cytosol	68.75	90.87
EER92293	Sorghum	cytosol	80.92	79.61
Zm00001d047502_P001	Maize	extracellular	80.76	79.45
CDX87315	Canola	cytosol	66.45	77.99
CDY38671	Canola	cytosol	66.28	77.65
CDY61276	Canola	cytosol	66.12	77.46
CDY39973	Canola	cytosol	65.95	77.41
VIT_09s0002g08120.t01	Wine grape	cytosol	73.19	75.81
KRH68534	Soybean	cytosol	73.19	75.81
PGSC0003DMT400036663	Potato	cytosol	73.03	75.38
KRG94409	Soybean	cytosol	72.86	75.34
GSMUA_Achr2P09160_001	Banana	cytosol	66.94	74.41
PGSC0003DMT400073340	Potato	cytosol	72.04	74.36
Solyc03g117440.2.1	Tomato	cytosol, nucleus	72.7	74.29
Solyc06g068280.2.1	Tomato	extracellular, nucleus	72.2	73.78
Bra008471.1-P	Field mustard	cytosol	68.26	73.71
Bra018133.1-P	Field mustard	cytosol	71.05	73.47
CDX67949	Canola	cytosol	65.3	72.98
AT4G33370.1	Thale cress	cytosol	64.97	72.88
Bra035177.1-P	Field mustard	cytosol	70.23	72.62
AT5G51280.1	Thale cress	cytosol	69.74	71.74
Bra003568.1-P	Field mustard	cytosol	67.93	69.88
GSMUA_Achr1P13820_001	Banana	mitochondrion	59.54	66.79
CDX79384	Canola	cytosol	39.64	61.79
TraesCS3D01G106000.1	Wheat	cytosol	27.8	34.07
TraesCS3D01G412400.2	Wheat	cytosol	28.29	29.91
TraesCS5D01G125100.1	Wheat	nucleus	25.33	28.84
TraesCS4D01G148700.1	Wheat	golgi	28.12	28.45
TraesCS5D01G465100.1	Wheat	cytosol	27.96	26.73
TraesCS3D01G131100.11	Wheat	cytosol	26.81	24.96
TraesCS4D01G184200.1	Wheat	mitochondrion	31.09	23.95
TraesCS2D01G149500.1	Wheat	nucleus	29.44	21.7
TraesCS3D01G202500.3	Wheat	nucleus	27.63	20.77
TraesCS4D01G041400.1	Wheat	nucleus	27.14	20.6
TraesCS7D01G294500.1	Wheat	nucleus	27.63	16.36
TraesCS3D01G100900.1	Wheat	cytosol	27.63	12.69

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0008270	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS5D01G159000
EnsemblPlants:TraesCS5D01G159000.1	InterPro:Znf_CCHC	TIGR:cd00079	TIGR:cd00268	SEG:seg	:

Description

No Description!

Coordinates

chr5D:+:247072650..247075618

Molecular Weight (calculated)

67579.2 Da

IEP (calculated)

8.141

GRAVY (calculated)

-0.282

Length

608 amino acids

Sequence
(BLAST)

001: MAAAAAAKSD DEDNYEEYVP VAKRRAMEAD RFRHQRLPKP AVPSLPPPPP PPTNNSAPGP AAKPSLLVTS TLRKRTAPEI TPTERLIQEE QKIAEEASYR
101: TTLKPVGEIA KDITYTEPLR TGWKPPLWLR RMPRQKADEL RRKWHILVEG EEVPPAARNF WDLRFPEPIS RMLREKGIVQ PTPIQVQGLP VALSGRDMIG
201: FAFTGSGKTL VFVLPLIMVA LQEEMLMPIV PGEGPFGMII CPSRELAKQT YDVIDMFLSP LKQAGFPEIR PLLCIGGVDM RTQLDVVRKG VHIVVATPGR
301: LKDLLAKKMN LDNCRYVTLD EADRLVDLGF EDDIREVLNH FKVKDNFKAP RQTLLFSATM PKKIQNFAMS ALVKPVVVNV GRAGAANLDV IQEVEYVKED
401: ARIIYLLECL QKTPPPALIF CENKADVDYI HEYLLLKGVE AVAIHGGKDQ EERQSAIEFF KNGKKDVLVA TDVASKGLDF PDIQHVINYD MPAEIENYVH
501: RIGRTGRCGK TGIATTFINK NQTETTLLDL KHLLKEAKQR IPPVLAELVD PLEDAEAIAK ASGVKGCASC GGLGHRIADC PKLEHQRSAA MAGSRRDYYG
601: GGGYRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.