Factsheet for GSMUA_Achr2P09160_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_09s0002g08120.t01	Wine grape	cytosol	85.56	79.73
Os02t0150100-02	Rice	cytosol	65.45	77.83
KRH68534	Soybean	cytosol	83.0	77.34
PGSC0003DMT400036663	Potato	cytosol	83.0	77.08
KRG94409	Soybean	cytosol	82.63	76.87
Solyc03g117440.2.1	Tomato	cytosol, nucleus	83.18	76.47
CDY38671	Canola	cytosol	72.21	76.11
PGSC0003DMT400073340	Potato	cytosol	81.9	76.06
CDY39973	Canola	cytosol	71.85	75.87
CDY61276	Canola	cytosol	71.85	75.72
Solyc06g068280.2.1	Tomato	extracellular, nucleus	82.27	75.63
CDX87315	Canola	cytosol	71.48	75.48
Bra018133.1-P	Field mustard	cytosol	79.71	74.15
AT5G51280.1	Thale cress	cytosol	79.89	73.94
Bra008471.1-P	Field mustard	cytosol	75.87	73.71
Bra035177.1-P	Field mustard	cytosol	78.79	73.3
GSMUA_Achr1P13820_001	Banana	mitochondrion	72.03	72.69
CDX67949	Canola	cytosol	71.48	71.88
AT4G33370.1	Thale cress	cytosol	69.65	70.3
Bra003568.1-P	Field mustard	cytosol	75.5	69.88
TraesCS3B01G141300.1	Wheat	cytosol	77.88	69.38
HORVU5Hr1G048040.1	Barley	plastid	72.03	68.88
EER92293	Sorghum	cytosol	77.51	68.61
Zm00001d047502_P001	Maize	extracellular	77.15	68.28
TraesCS5B01G152200.1	Wheat	cytosol	74.95	67.32
TraesCS5D01G159000.1	Wheat	cytosol	74.41	66.94
HORVU3Hr1G022710.1	Barley	mitochondrion	77.88	66.77
TraesCS5A01G153700.1	Wheat	cytosol	70.38	66.04
Os06t0697200-00	Rice	cytosol	74.59	65.91
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	78.25	65.05
CDX79384	Canola	cytosol	41.32	57.95
GSMUA_Achr8P01340_001	Banana	cytosol	25.05	35.77
GSMUA_Achr10P...	Banana	cytosol	29.07	31.99
GSMUA_Achr8P15350_001	Banana	plastid	29.8	27.49
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	29.62	26.73
GSMUA_Achr9P25390_001	Banana	mitochondrion	21.02	25.67
GSMUA_Achr6P29700_001	Banana	plastid	27.06	25.61
GSMUA_Achr1P13000_001	Banana	cytosol	32.18	25.36
GSMUA_Achr1P24870_001	Banana	cytosol	30.71	25.34
GSMUA_Achr11P...	Banana	nucleus	25.96	24.61
GSMUA_Achr3P01410_001	Banana	nucleus	22.85	23.72
GSMUA_Achr4P17320_001	Banana	plastid	19.93	21.37
GSMUA_Achr5P06030_001	Banana	nucleus	27.06	20.58
GSMUA_Achr8P31890_001	Banana	nucleus	27.97	19.47
GSMUA_Achr1P15980_001	Banana	cytosol	29.25	15.15
GSMUA_Achr10P...	Banana	cytosol	27.42	14.98

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0008270	EnsemblPlantsGene:GSMUA_Achr2G09160_001	EnsemblPlants:GSMUA_Achr2P09160_001
EnsemblPlants:GSMUA_Achr2T09160_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001
UniProt:M0S6F7	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270	PFAM:PF00271	PFscan:PS50158
PFscan:PS51192	PANTHER:PTHR24031	PANTHER:PTHR24031:SF542	SMART:SM00343	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI000295826B	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg

Description

DEAD-box ATP-dependent RNA helicase 35 [Source:GMGC_GENE;Acc:GSMUA_Achr2G09160_001]

Coordinates

chr2:+:12907554..12911155

Molecular Weight (calculated)

60685.4 Da

IEP (calculated)

6.793

GRAVY (calculated)

-0.365

Length

547 amino acids

Sequence
(BLAST)

001: MASADAPPKP PPSTAEHDDD DDDYEDYIPV KKRRAIEAQK ILQRKGRPTS AGDSDAANRP QALAEAKPSL LVKASQLKRD LPEISPTEQL VQQEKEMIEH
101: LSDRKTLMSV RELAKGITYT DPIPTGWKPP LAIRRMPARH ADAIRRQWHI LVEGENPTPI QVQGLPVILA GRDMIGIAFT GSGKTLVFVL PLIMTALQEE
201: VMMPIVPGEG PFGLVVCPSR ELARQTYEVV EQFLVPLRDH GYPELRPLLC IGGVDMRSQL EVVKKGVHIV VATPGRLKDL LAKKKMNLDN CRYLTLDEAD
301: RLVDLGFEDD IREVFDHFKA QRQTLLFSAT MPKKIQNFAK SALVKPVTVN VGRAGAANLD VIQEVEYVKQ EAKIVYLLEC LQKTPPPDQE EREYAIASFK
401: SGKKDVLVAT DVASKGLDFP DIQHVINYDM PAEIENYVHR IGRTGRCGKT GIATTFINKN QTETTLLDLK HLLQEAKQRI PPVLAELNDP MEDGDALTDA
501: SGVKGCAYCG GLGHRIRDCP KLEHQKSMAI AGSKRDYFGS GGYRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.