Factsheet for GSMUA_Achr3P01410_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH51212	Soybean	nucleus	85.58	64.34
KRH01937	Soybean	nucleus	85.77	64.02
PGSC0003DMT400043101	Potato	nucleus	83.11	61.95
VIT_03s0038g00010.t01	Wine grape	cytosol	83.49	61.8
VIT_09s0054g01810.t01	Wine grape	cytosol	82.73	61.5
CDY53786	Canola	nucleus	67.17	60.0
Zm00001d033704_P007	Maize	extracellular	83.49	59.62
Zm00001d013453_P001	Maize	nucleus	82.73	59.4
TraesCS4A01G270200.1	Wheat	nucleus	81.59	59.15
HORVU6Hr1G080730.2	Barley	cytosol	36.62	59.02
TraesCS4B01G043900.1	Wheat	nucleus	81.59	58.98
CDX84672	Canola	cytosol	49.91	58.84
Solyc02g081290.2.1	Tomato	nucleus	72.68	58.65
Bra021872.1-P	Field mustard	nucleus	72.87	58.27
AT2G33730.1	Thale cress	nucleus	80.46	57.84
Os03t0708600-02	Rice	nucleus	79.7	57.07
PGSC0003DMT400024330	Potato	cytosol	72.3	56.95
Solyc02g068190.1.1	Tomato	cytosol, nucleus	71.35	56.8
CDX79541	Canola	nucleus	67.17	56.28
CDY37696	Canola	nucleus	62.81	56.1
HORVU4Hr1G007110.17	Barley	mitochondrion	81.78	55.97
KXG37746	Sorghum	nucleus	83.68	54.58
TraesCS4D01G041400.1	Wheat	nucleus	81.78	53.81
TraesCS5B01G079300.1	Wheat	nucleus	73.24	53.69
TraesCS6B01G364300.1	Wheat	nucleus, plastid	65.65	53.31
TraesCS6B01G364400.1	Wheat	nucleus, plastid	65.65	53.31
TraesCS1B01G445500.1	Wheat	cytosol	45.16	52.08
TraesCS1A01G415500.1	Wheat	cytosol	63.0	51.55
HORVU3Hr1G031710.1	Barley	mitochondrion	24.86	50.19
HORVU1Hr1G091050.3	Barley	nucleus	56.55	49.83
OQU83862	Sorghum	nucleus	60.53	49.69
HORVU1Hr1G083090.1	Barley	cytosol	20.49	43.03
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	29.6	41.05
GSMUA_Achr8P01340_001	Banana	cytosol	22.01	30.29
GSMUA_Achr10P...	Banana	cytosol	26.76	28.37
GSMUA_Achr8P15350_001	Banana	plastid	27.51	24.45
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	26.76	23.27
GSMUA_Achr2P09160_001	Banana	cytosol	23.72	22.85
GSMUA_Achr11P...	Banana	nucleus	24.67	22.53
GSMUA_Achr1P24870_001	Banana	cytosol	28.27	22.47
GSMUA_Achr4P17320_001	Banana	plastid	21.25	21.96
GSMUA_Achr6P29700_001	Banana	plastid	23.91	21.8
GSMUA_Achr1P13000_001	Banana	cytosol	28.27	21.47
GSMUA_Achr1P13820_001	Banana	mitochondrion	21.44	20.85
GSMUA_Achr9P25390_001	Banana	mitochondrion	15.94	18.75
GSMUA_Achr8P31890_001	Banana	nucleus	26.57	17.81
GSMUA_Achr5P06030_001	Banana	nucleus	22.2	16.27
GSMUA_Achr1P15980_001	Banana	cytosol	25.05	12.5
GSMUA_Achr10P...	Banana	cytosol	23.72	12.49

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:GSMUA_Achr3G01410_001	EnsemblPlants:GSMUA_Achr3P01410_001	EnsemblPlants:GSMUA_Achr3T01410_001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	UniProt:M0SAV9	InterPro:P-loop_NTPase	PFAM:PF00270	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SUPFAM:SSF52540	UniParc:UPI0002959457	SEG:seg	:	:

Description

DEAD-box ATP-dependent RNA helicase 21 [Source:GMGC_GENE;Acc:GSMUA_Achr3G01410_001]

Coordinates

chr3:-:995777..997954

Molecular Weight (calculated)

61738.6 Da

IEP (calculated)

10.011

GRAVY (calculated)

-0.959

Length

527 amino acids

Sequence
(BLAST)

001: MKRSADDRDR KLPSATDIKP VFITKAERQR LALQRREEAV AEQRRDRDRD RDRERERERE RERERERDRD RDRRARDRER EREDEARSRE RARAEKQAER
101: ERSKELDAIK EQYLGSKKPK KRVIKPSEKF RFSFDWENTE DTSRDMNALY QNPHEARLLF GRGFVAGEAA ALRKKEAAAD LYDSFDMRVD RHWSEKKLEE
201: MTERDWRIFR EDYNISFKGS RIPRPMRSWA ESKLRTELLK AIEKAGYKTP SPIQMAAIPL GLQQRDVIGI AETGSGKTAA FVLPMLTYIT RLPPMSEENE
301: AEGPYAVVMA PTRELAQQIE DETVKFAHYL GIKVVIATPG RLLDCLERRY AVLNQCNYVV LDEADRMIDM GFEPQVKRIY RTTYMFSATM PPAVERLARK
401: YLRNPESEKL PTLQKLLDDL GDKTAIVFCN TKKEISLEGF RNKRFNMPNQ IDMYTHRIGR TGRAGKTGTA TTFLTLHDSD VFYDLKQMLI QSNSPVPPEL
501: ARHEASKFKP GTIPDRPPRR NETLFAH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.