CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	nucleus, plastid
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033704_P007	Maize	extracellular	89.73	98.24
Zm00001d013453_P001	Maize	nucleus	87.5	96.32
TraesCS4A01G270200.1	Wheat	nucleus	82.3	91.47
TraesCS4B01G043900.1	Wheat	nucleus	82.3	91.22
Os03t0708600-02	Rice	nucleus	81.93	89.95
HORVU4Hr1G007110.17	Barley	mitochondrion	84.03	88.18
TraesCS4D01G041400.1	Wheat	nucleus	84.9	85.64
GSMUA_Achr3P01410_001	Banana	nucleus	54.58	83.68
KRH51212	Soybean	nucleus	69.31	79.89
KRH01937	Soybean	nucleus	69.68	79.75
PGSC0003DMT400043101	Potato	nucleus	69.43	79.35
CDY53786	Canola	nucleus	57.8	79.15
CDX84672	Canola	cytosol	43.44	78.52
Solyc02g081290.2.1	Tomato	nucleus	63.24	78.25
VIT_09s0054g01810.t01	Wine grape	cytosol	68.56	78.14
VIT_03s0038g00010.t01	Wine grape	cytosol	68.69	77.95
TraesCS6B01G364400.1	Wheat	nucleus, plastid	62.5	77.81
HORVU6Hr1G080730.2	Barley	cytosol	31.44	77.68
TraesCS6B01G364300.1	Wheat	nucleus, plastid	62.38	77.66
Bra021872.1-P	Field mustard	nucleus	63.24	77.54
CDY37696	Canola	nucleus	55.69	76.27
AT2G33730.1	Thale cress	nucleus	68.19	75.17
PGSC0003DMT400024330	Potato	cytosol	60.77	73.39
CDX79541	Canola	nucleus	57.05	73.29
Solyc02g068190.1.1	Tomato	cytosol, nucleus	60.02	73.26
OQU83862	Sorghum	nucleus	54.58	68.69
KXG31614	Sorghum	cytosol	22.28	36.59
EER96257	Sorghum	cytosol	21.16	33.4
OQU76674	Sorghum	cytosol	22.28	31.75
EES04084	Sorghum	cytosol	22.03	30.8
KXG37329	Sorghum	cytosol, plastid	23.64	30.08
KXG28851	Sorghum	cytosol, plastid	23.14	29.92
KXG34634	Sorghum	plastid	23.64	29.57
EER92293	Sorghum	cytosol	21.16	27.67
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	24.01	25.33
OQU86230	Sorghum	cytosol	21.66	24.48
KXG32714	Sorghum	nucleus	23.39	23.89
OQU79814	Sorghum	nucleus	25.37	20.77
EES14596	Sorghum	nucleus	25.87	19.68
OQU84042	Sorghum	cytosol	22.28	12.97

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	UniProt:A0A1B6QIK6	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	ProteinID:KXG37745.1	EnsemblPlants:KXG37746	ProteinID:KXG37746
ProteinID:KXG37746.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	EnsemblPlantsGene:SORBI_3001G119900	SUPFAM:SSF52540	UniParc:UPI00081AEA32	SEG:seg

Description

hypothetical protein

Coordinates

chr1:+:9323804..9328062

Molecular Weight (calculated)

92072.6 Da

IEP (calculated)

9.424

GRAVY (calculated)

-0.939

Length

808 amino acids

Sequence
(BLAST)

001: MSTSVTMSSP GPDKHGPNRS KSVAPEVNSD AAPLFTQTVV RPTSANPPSP PCSTRAAAMK RSADALTEPA KPVFLTKAER ERLALERRQA AVSDQRRTAL
101: DLLQSLPRPP PPPPAGGAPP SGSNLAPRDS SNSHRDSSDR DRDRDRDRDR ERRRDDDSRR DRDRDRDRDR DRDDSSRRDR DRDRRDRDRD RDRDRERERE
201: RERERDRDRE RGDRGERERD RLEKMAERER EKELDAIKEQ YLGSKKPKKR VIKPSEKFRF SFDWENTEDT SRDMNALYQS PHEARLLFGR GFLAGIDRRE
301: QKKAAAAHEK ETRAELRRKA GVEDRPEDDA VDKKKAAAAE MYDAFDMRVD RHWSEKALEE MTERDWRIFR EDFNISYKGS RIPRPMRKWS ESKLGTELLR
401: AIDKAGYEKP SPIQMAAIPL GLQQRDVIGI AETGSGKTAA FVLPMLSYIT RLPPISEENE AEGPYAVVMA PTRELAQQIE EETVKFATYL GIKVVSIVGG
501: QSIEEQGFKI RQGCEIVIAT PGRLLDCLER RYAVLNQCNY VVLDEADRMI DMGFEPQVVG VLDAMPSSNL KPENEDEELD EKRIYRTTYM FSATMPPAVE
601: RLARKYLRNP VVVTIGTAGK ATDLITQNVI MVKESEKMPR LQKILTDLGD KTAIVFCNTK KTADMRAKDL DKAGFRVTTL HGGKSQDQRE ISLDGFRNRR
701: FNVLVATDVA GRGIDIPDVA HVINYEMPSS VDTYTHRIGR TGRAGKKGVA TSFLTLENTD IFFDLKQMLI QSNSPVPPEL ARHEASKFKP GSIPDRPPRR
801: NDTVFANH

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.