Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os01t0197200-01 | Rice | plasma membrane | 96.34 | 95.95 |
| TraesCS3D01G106000.1 | Wheat | cytosol | 93.29 | 92.54 |
| TraesCS3A01G103700.1 | Wheat | cytosol | 93.29 | 92.54 |
| TraesCS3B01G121100.1 | Wheat | cytosol | 91.67 | 92.42 |
| Zm00001d039452_P002 | Maize | cytosol | 98.17 | 87.34 |
| GSMUA_Achr10P... | Banana | cytosol | 86.59 | 85.71 |
| Solyc12g044860.1.1 | Tomato | nucleus | 81.91 | 84.13 |
| PGSC0003DMT400083878 | Potato | cytosol | 84.55 | 83.03 |
| CDY10596 | Canola | nucleus | 83.33 | 82.16 |
| VIT_09s0002g02100.t01 | Wine grape | cytosol | 85.98 | 82.14 |
| Bra030884.1-P | Field mustard | nucleus | 83.13 | 81.96 |
| CDY02459 | Canola | cytosol | 83.13 | 81.96 |
| KRH47127 | Soybean | nucleus | 84.15 | 81.66 |
| KRH44155 | Soybean | cytosol | 84.15 | 81.66 |
| HORVU3Hr1G018850.7 | Barley | cytosol | 88.41 | 79.52 |
| KRH48684 | Soybean | cytosol, endoplasmic reticulum | 72.76 | 75.21 |
| AT1G55150.2 | Thale cress | cytosol | 79.06 | 73.95 |
| EES04084 | Sorghum | cytosol | 70.12 | 59.69 |
| EER96257 | Sorghum | cytosol | 39.63 | 38.09 |
| OQU76674 | Sorghum | cytosol | 38.82 | 33.69 |
| OQU86230 | Sorghum | cytosol | 47.76 | 32.87 |
| KXG32714 | Sorghum | nucleus | 50.0 | 31.1 |
| KXG37329 | Sorghum | cytosol, plastid | 38.01 | 29.45 |
| KXG28851 | Sorghum | cytosol, plastid | 36.59 | 28.8 |
| KXG34634 | Sorghum | plastid | 37.4 | 28.48 |
| EER94974 | Sorghum | cytosol, mitochondrion, nucleus, plastid | 44.31 | 28.46 |
| EER92293 | Sorghum | cytosol | 35.57 | 28.32 |
| OQU83862 | Sorghum | nucleus | 33.94 | 26.01 |
| KXG37746 | Sorghum | nucleus | 36.59 | 22.28 |
| OQU79814 | Sorghum | nucleus | 42.28 | 21.07 |
| EES14596 | Sorghum | nucleus | 41.87 | 19.4 |
| OQU84042 | Sorghum | cytosol | 48.17 | 17.07 |
Protein Annotations
| MapMan:16.4.1.1.4 | Gene3D:3.40.50.300 | UniProt:A0A1B6Q114 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | EnsemblPlants:KXG31614 |
| ProteinID:KXG31614 | ProteinID:KXG31614.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF269 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | EnsemblPlantsGene:SORBI_3003G030500 | SUPFAM:SSF52540 | UniParc:UPI00081ACF56 |
| SEG:seg | : | : | : | : | : |
Description
hypothetical protein
Coordinates
chr3:+:2709205..2717073
Molecular Weight (calculated)
54282.8 Da
IEP (calculated)
8.157
GRAVY (calculated)
-0.365
Length
492 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRYDGRAAD AGSYRDRRSE GAFGGGSRAF AAPSKADASA AASELDGLPR FEKNFYVESP SVAGMTEEEV EAYRRRREIT VEGRDVPKPV LEFRDVGFPE
101: YVLQEITKAG FVEPTPIQSQ GWPMALRGRD LIGIAETGSG KTLAYLLPAI VHVNAQPILA PGDGPIVLVL APTRELAVQI QQEATKFGAS SKIKSTCIYG
201: GVPKGPQVRD LQKGVEIVIA TPGRLIDMIE SHHTNLRRVT YLVLDEADRM LDMGFEPQIK KIVSQIRPDR QTLYWSATWP KEVEQLARNF LFDPYKVTIG
301: SEELKANHAI VQHVEILSES QKYNKLVNLL EDIMDGSRIL IFMDTKKGCD QITRQLRMDG WPALSIHGDK SQAERDWVLS EFKSGKSPIM TATDVAARGL
401: DVKDVKYVIN YDFPGSLEDY VHRIGRTGRA GAKGTAYSFF TAANARFAKE LISILEEAGQ KVSSELAAMG RGAPPPSSGY RDRYRGYGGG RS
101: YVLQEITKAG FVEPTPIQSQ GWPMALRGRD LIGIAETGSG KTLAYLLPAI VHVNAQPILA PGDGPIVLVL APTRELAVQI QQEATKFGAS SKIKSTCIYG
201: GVPKGPQVRD LQKGVEIVIA TPGRLIDMIE SHHTNLRRVT YLVLDEADRM LDMGFEPQIK KIVSQIRPDR QTLYWSATWP KEVEQLARNF LFDPYKVTIG
301: SEELKANHAI VQHVEILSES QKYNKLVNLL EDIMDGSRIL IFMDTKKGCD QITRQLRMDG WPALSIHGDK SQAERDWVLS EFKSGKSPIM TATDVAARGL
401: DVKDVKYVIN YDFPGSLEDY VHRIGRTGRA GAKGTAYSFF TAANARFAKE LISILEEAGQ KVSSELAAMG RGAPPPSSGY RDRYRGYGGG RS
001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S
Arabidopsis Description
DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.