CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 4
mitochondrion 2

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH44155	Soybean	cytosol	98.42	98.42
KRH48684	Soybean	cytosol, endoplasmic reticulum	85.01	90.55
Solyc12g044860.1.1	Tomato	nucleus	80.87	85.59
GSMUA_Achr10P...	Banana	cytosol	83.63	85.31
PGSC0003DMT400083878	Potato	cytosol	84.22	85.23
CDY10596	Canola	nucleus	83.43	84.77
Bra030884.1-P	Field mustard	nucleus	83.23	84.57
CDY02459	Canola	cytosol	83.23	84.57
Os01t0197200-01	Rice	plasma membrane	82.05	84.21
KXG31614	Sorghum	cytosol	81.66	84.15
VIT_09s0002g02100.t01	Wine grape	cytosol	85.01	83.69
TraesCS3D01G106000.1	Wheat	cytosol	80.87	82.66
TraesCS3A01G103700.1	Wheat	cytosol	80.67	82.46
TraesCS3B01G121100.1	Wheat	cytosol	79.09	82.17
AT1G55150.2	Thale cress	cytosol	81.07	78.14
Zm00001d039452_P002	Maize	cytosol	82.45	75.59
HORVU3Hr1G018850.7	Barley	cytosol	78.11	72.39
KRH03228	Soybean	nucleus	70.22	59.14
KRH57127	Soybean	endoplasmic reticulum, nucleus	70.02	58.01
KRH39630	Soybean	nucleus	39.65	37.43
KRH74291	Soybean	nucleus	39.45	37.24
KRH30661	Soybean	endoplasmic reticulum	34.32	30.8
KRG97325	Soybean	endoplasmic reticulum	35.9	30.8
KRH38030	Soybean	endoplasmic reticulum	37.08	30.77
KRG98124	Soybean	endoplasmic reticulum	34.52	30.65
KRH71800	Soybean	plastid	36.88	30.61
KRH56577	Soybean	nucleus	46.75	30.58
KRG93254	Soybean	endoplasmic reticulum	46.75	30.54
KRH58901	Soybean	nucleus	36.88	30.46
KRH42811	Soybean	endoplasmic reticulum	36.88	30.21
KRH20283	Soybean	plastid	34.91	30.2
KRH31589	Soybean	nucleus	35.9	30.13
KRH68534	Soybean	cytosol	34.52	29.81
KRG94409	Soybean	cytosol	34.32	29.59
KRH03709	Soybean	plastid	34.32	28.52
KRG96540	Soybean	cytosol, mitochondrion	42.6	28.12
KRH68277	Soybean	nucleus	42.6	27.62
KRH01937	Soybean	nucleus	35.11	25.21
KRH51212	Soybean	nucleus	34.71	25.11
KRH36905	Soybean	nucleus	47.53	20.69
KRH11875	Soybean	endoplasmic reticulum	47.93	20.23
KRH77709	Soybean	nucleus	40.24	18.48
KRH27757	Soybean	nucleus	40.24	18.43

Protein Annotations

EntrezGene:100790464	MapMan:16.4.1.1.4	Gene3D:3.40.50.300	EMBL:ACUP02004137	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_07G010500
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1KGC5	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH47127	ProteinID:KRH47127	ProteinID:KRH47127.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0002338691	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr7:+:803172..810263

Molecular Weight (calculated)

56277.0 Da

IEP (calculated)

9.137

GRAVY (calculated)

-0.514

Length

507 amino acids

Sequence
(BLAST)

001: MSRYDSRSGD PTSYRDRRSD SGLGAPTGFG GSVQHSSSNR RDYDDGGSPK RNLSLDGLPH FEKNFYVESP AVRAMTDAEV NEYRQQREIT VEGRDIPKPV
101: KSFHDAGFPE YVMEEITKAG FTEPTPIQSQ GWPMALKGRD LIGIAETGSG KTLAYLLPSI VHVNAQPILN PGDGPIVLVL APTRELAVQI QQEATKFGAS
201: SRIKSTCIYG GVPKGPQVRD LQKGVEIVIA TPGRLIDMLE SNHTNLQRVT YLVLDEADRM LDMGFDPQLR KIVSQIRPDR QTLYWSATWP KEVEQLARKF
301: LYNPYKVIIG SSDLKANHAI RQYVDIVSEK QKYDKLVKLL EDIMDGSRIL IFMDTKKGCD QITRQLRMDG WPALSIHGDK SQAERDWVLS EFKSGKSPIM
401: TATDVAARGL DVKDVKYVIN YDFPGSLEDY VHRIGRTGRA GAKGTAYTYF TAANARFAKE LIAILEEAGQ KVSPELAAMG RGAPPPPSGP RGFQDRGRGY
501: GSSRPWS

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.