CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 4
cytosol 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96540	Soybean	cytosol, mitochondrion	94.76	96.48
CDX83333	Canola	nucleus	67.39	82.73
VIT_07s0005g01600.t01	Wine grape	cytosol	80.69	81.84
PGSC0003DMT400023277	Potato	cytosol	79.03	79.84
Solyc01g079330.2.1	Tomato	nucleus	78.77	79.59
GSMUA_Achr1P24870_001	Banana	cytosol	66.88	78.88
Bra000447.1-P	Field mustard	cytosol	67.65	78.6
CDX80096	Canola	cytosol	73.15	78.57
Bra004464.1-P	Field mustard	cytosol	73.53	78.55
CDY37796	Canola	cytosol	73.66	78.47
AT2G47330.1	Thale cress	cytosol	76.21	78.42
GSMUA_Achr1P13000_001	Banana	cytosol	69.18	77.95
CDX95719	Canola	cytosol	72.76	77.42
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	71.48	72.98
Os03t0308500-01	Rice	mitochondrion	71.61	72.73
Zm00001d047633_P002	Maize	nucleus	70.84	72.14
TraesCS4A01G121700.1	Wheat	mitochondrion	70.72	72.1
TraesCS4B01G181800.1	Wheat	nucleus	70.46	71.93
Zm00001d028898_P011	Maize	cytosol	70.59	71.69
TraesCS4D01G184200.1	Wheat	mitochondrion	70.59	69.96
HORVU4Hr1G053550.2	Barley	mitochondrion	70.08	69.02
KRH47127	Soybean	nucleus	27.62	42.6
KRH44155	Soybean	cytosol	27.49	42.41
KRH48684	Soybean	cytosol, endoplasmic reticulum	24.3	39.92
KRH03228	Soybean	nucleus	29.67	38.54
KRH57127	Soybean	endoplasmic reticulum, nucleus	29.67	37.91
KRH68534	Soybean	cytosol	26.09	34.75
KRG94409	Soybean	cytosol	26.09	34.69
KRH30661	Soybean	endoplasmic reticulum	24.94	34.51
KRG98124	Soybean	endoplasmic reticulum	24.94	34.15
KRG97325	Soybean	endoplasmic reticulum	25.7	34.01
KRH20283	Soybean	plastid	25.06	33.45
KRH31589	Soybean	nucleus	25.58	33.11
KRH71800	Soybean	plastid	25.83	33.06
KRH39630	Soybean	nucleus	22.63	32.96
KRH38030	Soybean	endoplasmic reticulum	25.58	32.73
KRH74291	Soybean	nucleus	22.38	32.59
KRH58901	Soybean	nucleus	25.58	32.57
KRH42811	Soybean	endoplasmic reticulum	25.7	32.47
KRH03709	Soybean	plastid	24.17	30.98
KRH51212	Soybean	nucleus	24.94	27.82
KRH01937	Soybean	nucleus	24.94	27.62
KRH77709	Soybean	nucleus	35.93	25.45
KRH56577	Soybean	nucleus	25.19	25.42
KRG93254	Soybean	endoplasmic reticulum	25.19	25.39
KRH27757	Soybean	nucleus	35.81	25.29
KRH36905	Soybean	nucleus	26.34	17.68
KRH11875	Soybean	endoplasmic reticulum	26.21	17.07

Protein Annotations

EntrezGene:100805571	Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02002105	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_03G220600
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1JQT4	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH68277	ProteinID:KRH68277	ProteinID:KRH68277.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI0002339D61	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:42362665..42367649

Molecular Weight (calculated)

85346.8 Da

IEP (calculated)

5.524

GRAVY (calculated)

-0.532

Length

782 amino acids

Sequence
(BLAST)

001: MSKRKFGFEG FGINRQSTYS FERPQAPQRL YIPPSARHGH DHYEDTDIDN IDYDDNNSNN NNNKDDDDDY GSNNNNGGGN DEDEIDPLDA FMEGIHEEMR
101: AAPPPKPKEK AEDRYRDDED DDPMESFLMA KKDLGLTLAS DALHAGYDSD EEVYAAAKAV DAGMIEYDSD DNPIVIDKKK IEPIPALDHS SIDYEPFTKD
201: FYEETPSISG MSEQDVSEYR KSLAIRVSGF DVPKPIKAFE DCGFSSQIMN AIKKQGYEKP TTIQCQALPV VLSGRDIIGI AKTGSGKTAS FVLPMIVHIM
301: DQPELQKEEG PIGVICAPTR ELAHQIFLEA KKFAKAYGVR VSAVYGGMSK LEQFKELKAG CEIVVATPGR LIDMLKMKAL TMMRATYLVL DEADRMFDLG
401: FEPQVRSIVG QIRPDRQTLL FSATMPCKVE KLAREILSDP IRVTVGEVGM ANEDITQVVH VTPSDSEKLP WLLEKLPEMI DQGDTLVFAS KKATVDEIES
501: QLAQRGFKVA ALHGDKDQAS RMDILQKFKS GLYHVLIATD VAARGLDIKS IKSVVNFDIA KDMDMHVHRI GRTGRAGDKD GVAYTLITLK EARFAGELVN
601: SLVAAGQNVS VELMDLAMKD GRFRSKRDAR KGGGKKGKGR GGGGGGGRGV RGVDFGLGIG YNPESNNAPS TTAPSRSAAV NSLRTGMMSQ FKSNFVAASS
701: NSQNQGFGNN TSMTANKRTA LPGFVSGGSI GGDINTYQST ASPNPATSAV ISTSQGYGVN PGQKSTNSSK PKERRRPSGW DR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.