Factsheet for HORVU4Hr1G053550.2

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 3
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G121700.1	Wheat	mitochondrion	94.33	97.65
TraesCS4B01G181800.1	Wheat	nucleus	93.83	97.26
TraesCS4D01G184200.1	Wheat	mitochondrion	93.95	94.55
Os03t0308500-01	Rice	mitochondrion	86.15	88.83
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	83.88	86.95
Zm00001d047633_P002	Maize	nucleus	82.87	85.68
Zm00001d028898_P011	Maize	cytosol	82.49	85.06
CDX83333	Canola	nucleus	59.7	74.41
GSMUA_Achr1P13000_001	Banana	cytosol	63.6	72.77
VIT_07s0005g01600.t01	Wine grape	cytosol	69.77	71.85
GSMUA_Achr1P24870_001	Banana	cytosol	59.95	71.79
KRG96540	Soybean	cytosol, mitochondrion	69.4	71.74
CDX80096	Canola	cytosol	64.86	70.74
Bra000447.1-P	Field mustard	cytosol	59.82	70.58
Bra004464.1-P	Field mustard	cytosol	64.86	70.36
CDY37796	Canola	cytosol	64.99	70.3
CDX95719	Canola	cytosol	64.99	70.2
KRH68277	Soybean	nucleus	69.02	70.08
AT2G47330.1	Thale cress	cytosol	66.88	69.87
PGSC0003DMT400023277	Potato	cytosol	67.76	69.51
Solyc01g079330.2.1	Tomato	nucleus	67.25	68.99
HORVU1Hr1G083090.1	Barley	cytosol	12.22	38.65
HORVU3Hr1G018850.7	Barley	cytosol	26.45	38.39
HORVU3Hr1G031710.1	Barley	mitochondrion	12.59	38.31
HORVU3Hr1G092610.1	Barley	cytosol	27.08	37.46
HORVU3Hr1G092600.1	Barley	cytosol	27.08	37.46
HORVU4Hr1G031280.1	Barley	cytosol, plastid	24.94	32.95
HORVU5Hr1G037290.3	Barley	nucleus	21.66	32.45
HORVU5Hr1G048040.1	Barley	plastid	23.3	32.34
HORVU3Hr1G022710.1	Barley	mitochondrion	24.43	30.41
HORVU5Hr1G109340.2	Barley	plastid	24.94	29.91
HORVU7Hr1G084210.1	Barley	cytosol	22.8	29.67
HORVU1Hr1G091050.3	Barley	nucleus	21.79	28.93
HORVU6Hr1G080730.2	Barley	cytosol	10.96	26.61
HORVU3Hr1G024610.13	Barley	cytosol, plastid	23.55	26.45
HORVU2Hr1G025790.1	Barley	nucleus	33.0	25.71
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	11.96	25.0
HORVU4Hr1G007110.17	Barley	mitochondrion	24.18	24.94
HORVU0Hr1G020490.1	Barley	nucleus	33.38	24.86
HORVU3Hr1G018170.3	Barley	cytosol	25.82	14.83

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A287P2N3	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:HORVU4Hr1G053550	EnsemblPlants:HORVU4Hr1G053550.2	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000B489669	SEG:seg	:

Description

No Description!

Coordinates

chrchr4H:+:445768711..445773323

Molecular Weight (calculated)

86114.7 Da

IEP (calculated)

6.543

GRAVY (calculated)

-0.436

Length

794 amino acids

Sequence
(BLAST)

001: FSPTLRVHRL PPRLATQTLA RSPPPPCTPS MSKRPRLEGF SIPRPTSYSF ERSQPAPRLY VPADDDLEEI AFSDDAAAPS DAAEGGKAED DEIDPLDAFM
101: AEIQEEIRAP PPPPKPEALR PADSDEDDDP MESFLRAKKD AGLTLAADVM NAGYNSDEEV YAAAKAVDAG MMEYDSDDNP IVVDKRKIEP IPPLDHSTIE
201: YEPFTKDFYE EKPSVSGMSV EEVADYMKSL AIRVSGFDVP RPVKNFEDCG FPVPLMNAIA KQGYEKPTTI QCQALPIVLS GRDIIGIAKT GSGKTAAFVL
301: PMIVHIMDQP ELQKEEGPIG VICAPTRELA HQIYLEAKKF AKPYNLQVAA VYGGVSKFEQ FKELKSGCEI VVATPGRLID LLKMKALRMF RATYSVLDEA
401: DRMFDLGFEP QIRSIVGQIR PDRQTLLFSA TMPYKVERLA REILTDLIRV TVGQVGSANE DIKQVVNVLP SDAEKMPWLL EKMPGMIDDG DVLVFATKKA
501: RVDEVENQLN QHGFKVAALH GDKDQASRME TLQKFKSGIY HVLVATDVAA RGLDIKSIKT VVNFDIAKEM DMHIHRIGRT GRAGDKDGTA YTLITQKESR
601: FAGELVHSLI AAGQDVPNEL MDLAMKDGRF RANRDSRKGG KKGGKGKGGG GGGGGGGGAR GRGRGIRGVD FGLGIGYGSE SGPQVPAPRS ATVNTLKTGM
701: MQNFKSSFVS ASSSAPSNST PSRGTPSFVK PALRGFVSGG TIGGDSGAAR PAPVVPSFVP ASRPAGNTNE NGKTYPESSR DQRRERKRPS GWDR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.