Factsheet for Bra004464.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX80096	Canola	cytosol	98.63	99.18
CDY37796	Canola	cytosol	97.95	97.68
Bra000447.1-P	Field mustard	cytosol	82.24	89.45
AT2G47330.1	Thale cress	cytosol	90.16	86.84
KRG96540	Soybean	cytosol, mitochondrion	78.83	75.13
KRH68277	Soybean	nucleus	78.55	73.53
PGSC0003DMT400023277	Potato	cytosol	75.0	70.93
VIT_07s0005g01600.t01	Wine grape	cytosol	74.59	70.82
Solyc01g079330.2.1	Tomato	nucleus	74.59	70.54
GSMUA_Achr1P24870_001	Banana	cytosol	62.43	68.93
Zm00001d047633_P002	Maize	nucleus	71.45	68.1
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	71.04	67.89
TraesCS4A01G121700.1	Wheat	mitochondrion	70.9	67.67
Os03t0308500-01	Rice	mitochondrion	71.17	67.66
TraesCS4B01G181800.1	Wheat	nucleus	70.36	67.23
GSMUA_Achr1P13000_001	Banana	cytosol	63.52	67.0
Zm00001d028898_P011	Maize	cytosol	69.67	66.23
TraesCS4D01G184200.1	Wheat	mitochondrion	70.9	65.78
HORVU4Hr1G053550.2	Barley	mitochondrion	70.36	64.86
Bra030884.1-P	Field mustard	nucleus	28.42	41.68
Bra035857.1-P	Field mustard	cytosol	30.19	37.39
Bra003341.1-P	Field mustard	cytosol	28.69	34.43
Bra018133.1-P	Field mustard	cytosol	27.46	34.18
Bra035177.1-P	Field mustard	cytosol	27.19	33.84
Bra008471.1-P	Field mustard	cytosol	25.96	33.75
Bra016869.1-P	Field mustard	cytosol, plastid	28.01	33.66
Bra003568.1-P	Field mustard	cytosol	26.64	32.99
Bra007399.1-P	Field mustard	cytosol	27.46	32.9
Bra035518.1-P	Field mustard	nucleus	24.04	32.84
Bra023227.1-P	Field mustard	nucleus	23.63	31.86
Bra007402.1-P	Field mustard	cytosol	27.73	31.62
Bra003343.1-P	Field mustard	cytosol	27.73	31.57
Bra040699.1-P	Field mustard	cytosol	24.86	29.89
Bra001004.1-P	Field mustard	cytosol	25.68	29.56
Bra029779.1-P	Field mustard	nucleus	34.84	28.75
Bra021872.1-P	Field mustard	nucleus	25.41	28.22
Bra014568.1-P	Field mustard	cytosol	25.14	27.63
Bra023478.1-P	Field mustard	cytosol	25.41	27.51
Bra025856.1-P	Field mustard	nucleus	36.48	22.8
Bra001200.1-P	Field mustard	cytosol	25.96	18.06

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra004464	EnsemblPlants:Bra004464.1	EnsemblPlants:Bra004464.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4CJT0	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00025480BE	SEG:seg

Description

AT2G47330 (E=0.0) | DEAD/DEAH box helicase, putative

Coordinates

chrA05:+:262716..265387

Molecular Weight (calculated)

79934.8 Da

IEP (calculated)

6.051

GRAVY (calculated)

-0.496

Length

732 amino acids

Sequence
(BLAST)

001: MSNRNSQRFR GGDNSEDADV DNIDFIDNEE EEEQAVHNGG GDDEDEIDPL DAFMEGIHQE MKSAPPPKPK AKAERYKDDD DDHVVSFLKA KKDLGLTLAA
101: DALNAGYNSD EEVYAAAKAV DAGMLEYDSD DNPIVVDKRK IEPIQALDHS SIDYEPINKD FYEEVDSISR MSEQEALDYR HSLGIRVSGF DVPRPVKTFE
201: DCGFSSQIMS AIKKQAYEKP TTIQCQALPV VLSGRDVIGI AKTGSGKTAA FVLPMIVHIM DHPELRREEG PIGVICAPTR ELAHQIYLEA KKFSKAYGLR
301: VSAVYGGMGK HEQFRELKAG CEIVVATPGR LIDMLKMKAL TMMRASYLVL DEADRMFDLG FEPQVRSIVG QIRPDRQTLL FSATMPWKVE KLAREILSDP
401: IRVTVGEAGM ANEDITQVVN VIPSDADKLP WLLEKLPGMI DEGDVLVFAS KKATVDEIEA QLTLNAFKVA ALHGDKDQAS RMETLQKFKS GVYHVLVATD
501: VAARGLDIKS LKTVVNYDTA KDMDMHVHRI GRTGRAGDKD GVAYTLVTQR EARFAGELIN SLVAAGQNVP PELMDLAMKD GRFKSKRDGR KGGGKKGRGR
601: GGGGGNRGVR GVDFGLGIGF NSESSGTPSQ AAPSRKGVIN SVRTGVMAQF KNSFVAATPS NPQSQGGYPN KRPSLMGFVS GGTIGGDMGR TQTQAPPVAA
701: SHNASLHNSS QKTPQSSEER PRERKRRSGW DN

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.