Factsheet for Bra003341.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67749	Canola	cytosol	98.52	99.83
Bra007399.1-P	Field mustard	cytosol	90.33	90.18
AT3G58510.2	Thale cress	cytosol	88.85	88.56
Bra016869.1-P	Field mustard	cytosol, plastid	82.46	82.59
Bra003343.1-P	Field mustard	cytosol	78.69	74.65
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	75.9	74.44
Bra007402.1-P	Field mustard	cytosol	76.72	72.9
KRH38030	Soybean	endoplasmic reticulum	72.95	72.83
Solyc03g052980.2.1	Tomato	nucleus	72.79	72.55
PGSC0003DMT400002828	Potato	cytosol	72.79	71.84
KRH71800	Soybean	plastid	71.64	71.52
TraesCS4B01G126000.1	Wheat	cytosol, plastid	68.85	69.88
TraesCS4D01G148700.1	Wheat	golgi	68.69	69.72
HORVU4Hr1G031280.1	Barley	cytosol, plastid	68.69	69.72
Os11t0599500-00	Rice	nucleus, plasma membrane	69.84	68.38
Zm00001d048924_P001	Maize	plasma membrane	67.87	68.09
KXG28851	Sorghum	cytosol, plastid	67.87	66.24
TraesCS4A01G141400.1	Wheat	plastid	68.69	63.87
Bra014568.1-P	Field mustard	cytosol	62.95	57.66
Bra030884.1-P	Field mustard	nucleus	29.02	35.47
Bra035857.1-P	Field mustard	cytosol	33.77	34.86
Bra035518.1-P	Field mustard	nucleus	28.69	32.65
Bra023227.1-P	Field mustard	nucleus	28.85	32.41
Bra001004.1-P	Field mustard	cytosol	33.61	32.23
Bra040699.1-P	Field mustard	cytosol	31.97	32.02
Bra023478.1-P	Field mustard	cytosol	33.77	30.47
Bra000447.1-P	Field mustard	cytosol	33.28	30.16
Bra008471.1-P	Field mustard	cytosol	27.38	29.66
Bra035177.1-P	Field mustard	cytosol	28.52	29.59
Bra018133.1-P	Field mustard	cytosol	28.52	29.59
Bra003568.1-P	Field mustard	cytosol	28.2	29.1
Bra004464.1-P	Field mustard	cytosol	34.43	28.69
Bra021872.1-P	Field mustard	nucleus	30.16	27.92
Bra029779.1-P	Field mustard	nucleus	30.0	20.63
Bra001200.1-P	Field mustard	cytosol	33.44	19.39
Bra025856.1-P	Field mustard	nucleus	31.8	16.57

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra003341	EnsemblPlants:Bra003341.1	EnsemblPlants:Bra003341.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4CGK8
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0002541696	SEG:seg	:	:	:	:

Description

AT3G58510 (E=5e-262) | DEAD box RNA helicase, putative (RH11)

Coordinates

chrA07:+:12700720..12703693

Molecular Weight (calculated)

65741.5 Da

IEP (calculated)

8.001

GRAVY (calculated)

-0.509

Length

610 amino acids

Sequence
(BLAST)

001: MSASWADVAD SEKAVSRAKP AYVPPHLRNR QPDPVAPSPQ NDRPGYGGQP SRWAPGGGVG GGGGYRNDVG RPGQGYGGRG GGGGGGGWNN RGGGWDREVN
101: PFGDDADLEP AVQDNTGINF DAYEDIPIET SGGDVPPPVN TFADIDLGEA LNLNIRRCKY VRPTPVQRHA IPILLAERDL MACAQTGSGK TAAFCFPIIS
201: GIMRDQHLQR PRGSRTVYPL AVILSPTREL ASQIHDEAKK FAYQTGVKVV VAYGGTPINQ QLRELERGVD ILVATPGRLN DLLERARVSM QMIKFLALDE
301: ADRMLDMGFE PQIRKIVEQM DMPPRGMRQT MLFSATFPRE IQRLASDFLS NYIFLAVGRV GSSTDLIAQR VEYVHEADKK SHLMDLLHAQ RETQDKQSLT
401: LVFVETKRSA DALENWLCMN EFPATSIHGD RTQQEREVAL RSFKTGRTPI LVATDVAARG LDIPHVAHVV NFDLPNDIDD YVHRIGRTGR AGKSGVATAF
501: FNEKNAQLAR QLAELMQEAN QEVPEWLTRY ASRASFGGGK KRGGGRFGGR DFRREGSFGS GGGRGGGRGN DYYGGGGGYG GGGYSGAPSG GGYGGAPSGG
601: YGGGVTSAWD

Best Arabidopsis Sequence Match ( AT3G58510.2 )
(BLAST)

001: MSASWADVAD SEKAVSQSKP PYVPPHLRNR PSEPVAAPLP QNDHAGYGGQ PAGSRWAPPS SGGGGASGGG YRNDGGRTGY GYGAGGGGGG GGGWNNRSGG
101: WDRREREVNP FGDDAELEPV FTEQENTGIN FDAYEDIPVE TSGGDVPPPV NTFADIDLGD ALNLNIRRCK YVRPTPVQRH AIPILLAERD LMACAQTGSG
201: KTAAFCFPII SGIMKDQHVE RPRGSRAVYP FAVILSPTRE LACQIHDEAK KFSYQTGVKV VVAYGGTPIH QQLRELERGC DILVATPGRL NDLLERARVS
301: MQMIRFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TMLFSATFPS QIQRLAADFM SNYIFLAVGR VGSSTDLITQ RVEFVQESDK RSHLMDLLHA
401: QRETQDKQSL TLVFVETKRG ADTLENWLCM NEFPATSIHG DRTQQEREVA LRSFKTGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID DYVHRIGRTG
501: RAGKSGIATA FFNENNAQLA RSLAELMQEA NQEVPEWLTR YASRASFGGG KKRSGGRFGG RDFRREGSYS RGGGGGGGGG GSDYYGGGGY GGGGYGGAPS
601: GGYGAGVTSA WD

Arabidopsis Description

RH11DEAD-box ATP-dependent RNA helicase 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.