Factsheet for Bra023478.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX91036	Canola	cytosol	95.41	94.3
CDX85591	Canola	cytosol	96.75	86.97
AT5G14610.1	Thale cress	cytosol	82.99	78.79
Bra001004.1-P	Field mustard	cytosol	73.82	78.46
Bra040699.1-P	Field mustard	cytosol	70.27	78.0
PGSC0003DMT400080614	Potato	nucleus	60.35	66.56
Solyc12g035130.1.1	Tomato	nucleus	59.91	66.18
Solyc02g086660.2.1	Tomato	nucleus	64.2	61.47
KRG93254	Soybean	endoplasmic reticulum	69.82	60.82
KRH56577	Soybean	nucleus	69.67	60.77
PGSC0003DMT400001391	Potato	cytosol	64.35	59.59
TraesCS3B01G149300.8	Wheat	cytosol	55.18	57.38
TraesCS3A01G130200.4	Wheat	cytosol	55.03	57.23
TraesCS3D01G131100.11	Wheat	cytosol	55.18	57.12
Zm00001d008725_P003	Maize	cytosol	58.14	56.71
Zm00001d039673_P002	Maize	cytosol	56.8	54.78
OQU86230	Sorghum	cytosol	57.4	54.27
HORVU3Hr1G024610.13	Barley	cytosol, plastid	55.77	53.32
Os01t0172200-01	Rice	cytosol	59.47	52.96
VIT_14s0066g01020.t01	Wine grape	cytosol	65.53	51.33
Zm00001d011155_P012	Maize	nucleus	59.32	51.21
KXG32714	Sorghum	nucleus	59.32	50.7
GSMUA_Achr8P31890_001	Banana	nucleus	57.84	49.75
Zm00001d044510_P002	Maize	mitochondrion	58.58	49.38
Os01t0549400-01	Rice	nucleus	57.54	49.12
TraesCS3D01G202500.3	Wheat	nucleus	56.21	46.97
TraesCS3A01G194200.1	Wheat	nucleus	53.85	46.49
TraesCS3B01G230800.1	Wheat	nucleus	53.4	45.99
Bra030884.1-P	Field mustard	nucleus	32.99	44.69
Bra035857.1-P	Field mustard	cytosol	35.5	40.61
Bra001200.1-P	Field mustard	cytosol	57.4	36.88
Bra035518.1-P	Field mustard	nucleus	27.37	34.51
Bra016869.1-P	Field mustard	cytosol, plastid	30.62	33.99
Bra003341.1-P	Field mustard	cytosol	30.47	33.77
Bra023227.1-P	Field mustard	nucleus	27.07	33.7
Bra007399.1-P	Field mustard	cytosol	30.18	33.39
Bra003343.1-P	Field mustard	cytosol	31.36	32.97
Bra007402.1-P	Field mustard	cytosol	30.92	32.55
Bra000447.1-P	Field mustard	cytosol	26.92	27.04
Bra014568.1-P	Field mustard	cytosol	26.63	27.03
Bra003568.1-P	Field mustard	cytosol	23.52	26.9
Bra018133.1-P	Field mustard	cytosol	23.37	26.87
Bra035177.1-P	Field mustard	cytosol	23.37	26.87
Bra008471.1-P	Field mustard	cytosol	22.34	26.82
Bra021872.1-P	Field mustard	nucleus	24.85	25.49
Bra004464.1-P	Field mustard	cytosol	27.51	25.41
Bra029779.1-P	Field mustard	nucleus	25.74	19.62
Bra025856.1-P	Field mustard	nucleus	27.81	16.05

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra023478	EnsemblPlants:Bra023478.1	EnsemblPlants:Bra023478.1-P
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4E3X5	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFAM:PF00397	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540
UniParc:UPI0002543575	InterPro:WW_dom	InterPro:WW_dom_sf	SEG:seg	:	:

Description

AT3G01540 (E=2e-237) DRH1, ATDRH1 | DRH1 (DEAD BOX RNA HELICASE 1); ATP-dependent RNA helicase/ ATPase

Coordinates

chrA02:+:3531256..3534408

Molecular Weight (calculated)

72183.9 Da

IEP (calculated)

9.898

GRAVY (calculated)

-0.610

Length

676 amino acids

Sequence
(BLAST)

001: MAATATASTI RYAPEDPNLP KPWKGLVDSR TGYLYFWNPE TNVTQYERPP GLAPPKPSPA PVSSSVQAQQ QPSSGYSSGK QEDKYDRDND GAKNDSGSRF
101: SEASRSGPVN SSNAANGPGN ASSGGSSAVV PPPSAAAVEK MSPEAYCRRH EITVTGGQVP PPLMSFEATG FPPELLRELY GAGFSAPSPI QAQSWPVAMQ
201: NRDIVAVAKT GSGKTLGYLI PGFMHLQRVR NDSRMGPTIL VLSPTRELAT QIQAEALKFG KSSRISCACL YGGAPKGPQL KEIERGVDIV IATPGRLNDI
301: LEMKRISLHQ VSYLVLDEAD RMLDMGFEPQ IRKIVNEVPT KRQTLMYTAT WPKEVRKIAS DLLSSPAQVN IGNVDELVAN KSITQTIEVI PPMEKQRRLE
401: QILRSQEPGS KIIIFCSTKR MCDTLARNLT RTFGANAIHG DKSQQERDDV LNQFRSGRTP VLVATDVAAR GLDVKDIRVV VNYDFPNGVE DYVHRIGRTG
501: RAGATGLAYT FFGDQDAKHA SDLIKILEGA SQKVPQEVRE LATRGGGMNK FRRWGTPSGG GGGGYGDSGY GGRGGGRGDS GYGGRGDSGY GGRGGSGYGG
601: RGDSGYGGRG DSGYGGRGGS GYGGRGGGDS RDSSGRGSGW GRERSRSPER FSRAAAGPST SSPPRSFHEA MMMRQK

Best Arabidopsis Sequence Match ( AT5G14610.2 )
(BLAST)

001: MAATASAIRY APEDPNLPKP WKGLVDSRTG YLYFWNPETN VTQYERPASS APPKLAAIPV SSSVQTNQQS SSGFNSGKED DKYGRGSDGP KSDSGSRFNE
101: AGRTGPISSN DAASGLGNAS SGGSSARGPP SSAAGNELSP EAYCRKHEIT VSGGQVPPPL MSFEATGLPN ELLREVYSAG FSAPSPIQAQ SWPIAMQNRD
201: IVAIAKTGSG KTLGYLIPGF MHLQRIHNDS RMGPTILVLS PTRELATQIQ VEALKFGKSS KISCACLYGG APKGPQLKEI ERGVDIVVAT PGRLNDILEM
301: KRISLHQVSY LVLDEADRML DMGFEPQIRK IVNEVPTKRQ TLMYTATWPK EVRKIAADLL VNPAQVNIGN VDELVANKSI TQTIEVLAPM EKHSRLEQIL
401: RSQEPGSKII IFCSTKRMCD QLARNLTRTF GAAAIHGDKS QAERDDVLNQ FRSGRTPVLV ATDVAARGLD VKDIRVVVNY DFPNGVEDYV HRIGRTGRAG
501: ATGLAYTFFG DQDAKHASDL IKILEGANQK VPPQVREMAT RGGGGMNKFR RWGTPSSGGG GGRGGYGDSG YGGRGESGYG SRGDSGYGGR GDSGGRGSWA
601: PSRDSSGSSG WGRERSRSPE RFRGGPPSTS SPPRSFHEAM MMKNR

Arabidopsis Description

DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.