Factsheet for TraesCS3D01G202500.3

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G194200.1	Wheat	nucleus	94.56	97.7
TraesCS3B01G230800.1	Wheat	nucleus	93.94	96.82
Os01t0549400-01	Rice	nucleus	77.38	79.04
KXG32714	Sorghum	nucleus	77.13	78.89
Zm00001d044510_P002	Maize	mitochondrion	76.76	77.43
Zm00001d011155_P012	Maize	nucleus	72.93	75.35
Bra001004.1-P	Field mustard	cytosol	47.71	60.69
Bra040699.1-P	Field mustard	cytosol	45.61	60.59
AT3G01540.2	Thale cress	cytosol	46.35	60.58
PGSC0003DMT400080614	Potato	nucleus	45.49	60.03
Solyc12g035130.1.1	Tomato	nucleus	44.75	59.15
CDX91943	Canola	cytosol	46.85	56.99
Bra023478.1-P	Field mustard	cytosol	46.97	56.21
TraesCS3D01G131100.11	Wheat	cytosol	44.99	55.74
CDY28671	Canola	cytosol	45.61	55.66
Solyc02g086660.2.1	Tomato	nucleus	48.33	55.38
CDX74304	Canola	cytosol	47.1	55.38
CDX91036	Canola	cytosol	46.48	54.97
GSMUA_Achr8P31890_001	Banana	nucleus	53.03	54.58
PGSC0003DMT400001391	Potato	cytosol	49.07	54.38
KRG93254	Soybean	endoplasmic reticulum	51.42	53.61
KRH56577	Soybean	nucleus	51.3	53.55
AT5G14610.1	Thale cress	cytosol	46.35	52.67
CDX85591	Canola	cytosol	46.85	50.4
TraesCS3D01G106000.1	Wheat	cytosol	30.53	49.8
VIT_14s0066g01020.t01	Wine grape	cytosol	52.41	49.13
TraesCS3D01G412400.2	Wheat	cytosol	29.79	41.91
TraesCS5D01G125100.1	Wheat	nucleus	22.74	34.46
TraesCS4D01G148700.1	Wheat	golgi	23.98	32.28
TraesCS5D01G465100.1	Wheat	cytosol	25.09	31.92
TraesCS3D01G100900.1	Wheat	cytosol	49.2	30.06
TraesCS5D01G159000.1	Wheat	cytosol	20.77	27.63
TraesCS4D01G184200.1	Wheat	mitochondrion	23.61	24.21
TraesCS4D01G041400.1	Wheat	nucleus	23.61	23.85
TraesCS2D01G149500.1	Wheat	nucleus	21.63	21.21
TraesCS7D01G294500.1	Wheat	nucleus	21.63	17.04

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF358	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456
SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G202500	EnsemblPlants:TraesCS3D01G202500.3
InterPro:WW_dom	InterPro:WW_dom_sf	TIGR:cd00079	TIGR:cd00201	TIGR:cd00268	SEG:seg

Description

No Description!

Coordinates

chr3D:+:248533879..248538155

Molecular Weight (calculated)

90078.8 Da

IEP (calculated)

10.746

GRAVY (calculated)

-0.958

Length

809 amino acids

Sequence
(BLAST)

001: MSGTAAPRYA PDDPTVPKPW RGLVDGTTGY LYYWNPDTNV TQYEKPVPPE AQLPPPPPLP PPPPRARGRD RRDRSRSRSR SRSRTPPRRE HRDRDRDRRR
101: HDEHDSFKSS SSHHHLPPAA TIPTAAADDP SAEAYRRRHE ITVIGDNVPA PITEFDSGVI PLDILKEIQR AGFPSPTPIQ AQSWPIALLN QDVVAIAKTG
201: SGKTLGYLLP GFMHIKRMQN STRSGPTVLV LAPTRELATQ ILEEAVKFGR SSRISSTCLY GGAPKGPQLR DLERGVDVVV ATPGRLNDIL EMRKISLKQV
301: SYLVLDEADR MLDMGFEPQI RKIVRDIPSG RQTLMYTATW PKEVRRIADE LLVHPVQVTI GSVDELVANK AITQHVEVVT PSEKLRRLEQ ILRSHDSGSK
401: ILIFCTTKRM CDQLSRTLNR QFGAAAIHGD KSQNEREKVL SQFRSGRSPI LVATDVAARG LDIKDIRVVI NYDFPTGVED YVHRIGRTGR AGATGLAYTF
501: LCDQDSKYVA DLIKILEGAD QDVPPELLDM VSRGGRGRKR NKWATRSERG GGSRSELDSR YGGRLEGSRG GRGKDDYGGR SRNDYGGSRR SARGRSRSLS
601: RSDSDRRSPS PKRRRHDVQA SRSRTRSRSR SRSRSRSRNK SRNRSRSRSR SRSYTRNRRA SRSRSRSPGA RRKTERRADS GSARPDSAHP VEKKSSPNAH
701: PSNDHKSRSV DPSNGDGKMG KVDLDRSPSL QERDDKSAPY SPVYNGEGGR GSMSPNGEPV VDAKPVEVSV SSKKREDEEE GMIDEEGEEG MIADDDPRAS
801: AAVQNGDDK

Best Arabidopsis Sequence Match ( AT3G01540.1 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDRSSNGW GRERERSRSP ERFNRAPPPS
601: STGSPPRSFH ETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.