Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7B01G187000.1 | Wheat | nucleus | 97.57 | 94.26 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 97.96 | 93.84 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 96.79 | 93.25 |
| Zm00001d024533_P001 | Maize | nucleus | 82.18 | 79.25 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 79.84 | 78.17 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 61.64 | 76.73 |
| OQU79814 | Sorghum | nucleus | 64.36 | 66.97 |
| CDY72529 | Canola | cytosol | 40.6 | 66.93 |
| AT3G09620.2 | Thale cress | nucleus | 56.28 | 58.38 |
| KRH77709 | Soybean | nucleus | 62.41 | 58.06 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 64.65 | 57.89 |
| CDY44720 | Canola | nucleus | 48.59 | 57.75 |
| KRH27757 | Soybean | nucleus | 62.12 | 57.63 |
| PGSC0003DMT400011665 | Potato | nucleus | 62.22 | 57.31 |
| Solyc12g098700.1.1 | Tomato | nucleus | 63.19 | 56.58 |
| Bra029779.1-P | Field mustard | nucleus | 48.78 | 56.48 |
| CDY31513 | Canola | nucleus | 59.49 | 55.24 |
| CDY41597 | Canola | nucleus | 41.58 | 55.24 |
| AT1G20920.3 | Thale cress | nucleus | 62.22 | 54.8 |
| Bra025856.1-P | Field mustard | nucleus | 62.41 | 54.74 |
| GSMUA_Achr10P... | Banana | cytosol | 52.48 | 53.85 |
| TraesCS3D01G106000.1 | Wheat | cytosol | 18.79 | 38.91 |
| TraesCS3D01G412400.2 | Wheat | cytosol | 19.47 | 34.78 |
| TraesCS4D01G184200.1 | Wheat | mitochondrion | 24.54 | 31.94 |
| TraesCS5D01G125100.1 | Wheat | nucleus | 16.26 | 31.27 |
| TraesCS5D01G465100.1 | Wheat | cytosol | 17.72 | 28.62 |
| TraesCS4D01G148700.1 | Wheat | golgi | 16.55 | 28.29 |
| TraesCS3D01G131100.11 | Wheat | cytosol | 17.72 | 27.87 |
| TraesCS5D01G159000.1 | Wheat | cytosol | 16.36 | 27.63 |
| TraesCS4D01G041400.1 | Wheat | nucleus | 18.89 | 24.22 |
| TraesCS3D01G202500.3 | Wheat | nucleus | 17.04 | 21.63 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 18.6 | 14.43 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS7D01G294500 | EnsemblPlants:TraesCS7D01G294500.1 | TIGR:cd00079 | TIGR:cd00268 | SEG:seg |
Description
No Description!
Coordinates
chr7D:+:368009563..368012745
Molecular Weight (calculated)
116436.0 Da
IEP (calculated)
5.823
GRAVY (calculated)
-0.988
Length
1027 amino acids
Sequence
(BLAST)
(BLAST)
0001: MSSGDDDRVT FSKHHHRDKD KDRDHSSSRR HRDKDRPSSR HHRDDRDGER ERERDRDRDR HHRDKERDRE ERKARERAEK EREKEEKREK EREREREERE
0101: MEKERERARR REERDREKEK SRRREAVDEE NEDRDRDRKR RRRSLHRHHH RDVEPEETPL SREEEEDAEE VERRRQKKEE DMEAEQQRLD DEMERRRRRV
0201: KEWQEKKRRE QQQEDGASGG AAAIEADGGG KSGKKWTLDG EESDEEDVKK LEENAGTGAM DVDLPNMDNG SNSGAGLEED EIDPLDAFMD SMVLPVVAKL
0301: ESATTATESV LADNAGGLND KGVKDATSNE DKKRQMMAIG RIMQGDDSDS DYDDANNGEA GSDDEDDAEF IKRVKKTKAE KLVIVDHSKI DYQPFRKNFY
0401: IEVKDIKNMP AEEAAAYRKL LELKVHGKDV PKPIKTWIQS GLTRVAKTGS GKTLAFVLPM LRHVKDQPPV VPGDGPIGLI MAPTRELVVQ IYSDIKKFSK
0501: VLGINCVPIY GGSGVAQQIS ELKRGAEIVV CTPGRMIDIL CTSSGKITNL RRVTFLVLDE ADRMFDMGFE PQITRIVQNT RPDRQTVLFS ATFPRQVEIL
0601: ARKVLTKPVE IQMGGRSVVN KDITQLVEVR PESERFFRLL ELLGEWFANG KILVFVQSQD KCDSLLKELF QHGYPCLSLH GGKDQNDRES TLADFKSNVC
0701: SLLIATSVAA RGLDVKDLEL VVNYDVTNHY EDYVHRVGRT GRAGRKGCAV TFISEEEERY APDLVKALEL SEQAVPEDLK ALADRFMSKV KQGTEQAHGT
0801: GYGGSGFKFN EEEEEARKSA KRAQAREYGY EEDKSDSDSD DEGGVRKQGG DVAAQAIAAA QAAAALAAAR ATSNAQQQVP ATTAGSLLPL PVAPNQQNNE
0901: ATQRALDAAY NLQKNLARIQ AHAVPEHYEA ELEINDFPQN ARWKITHKET LVPIQEWTGA AITTRGTFIP QGKIVGANER KLYLFIEGPN ESSVKKAKAE
1001: LKRVLEDCAN QALNLPGSAQ TGKYSVL
0101: MEKERERARR REERDREKEK SRRREAVDEE NEDRDRDRKR RRRSLHRHHH RDVEPEETPL SREEEEDAEE VERRRQKKEE DMEAEQQRLD DEMERRRRRV
0201: KEWQEKKRRE QQQEDGASGG AAAIEADGGG KSGKKWTLDG EESDEEDVKK LEENAGTGAM DVDLPNMDNG SNSGAGLEED EIDPLDAFMD SMVLPVVAKL
0301: ESATTATESV LADNAGGLND KGVKDATSNE DKKRQMMAIG RIMQGDDSDS DYDDANNGEA GSDDEDDAEF IKRVKKTKAE KLVIVDHSKI DYQPFRKNFY
0401: IEVKDIKNMP AEEAAAYRKL LELKVHGKDV PKPIKTWIQS GLTRVAKTGS GKTLAFVLPM LRHVKDQPPV VPGDGPIGLI MAPTRELVVQ IYSDIKKFSK
0501: VLGINCVPIY GGSGVAQQIS ELKRGAEIVV CTPGRMIDIL CTSSGKITNL RRVTFLVLDE ADRMFDMGFE PQITRIVQNT RPDRQTVLFS ATFPRQVEIL
0601: ARKVLTKPVE IQMGGRSVVN KDITQLVEVR PESERFFRLL ELLGEWFANG KILVFVQSQD KCDSLLKELF QHGYPCLSLH GGKDQNDRES TLADFKSNVC
0701: SLLIATSVAA RGLDVKDLEL VVNYDVTNHY EDYVHRVGRT GRAGRKGCAV TFISEEEERY APDLVKALEL SEQAVPEDLK ALADRFMSKV KQGTEQAHGT
0801: GYGGSGFKFN EEEEEARKSA KRAQAREYGY EEDKSDSDSD DEGGVRKQGG DVAAQAIAAA QAAAALAAAR ATSNAQQQVP ATTAGSLLPL PVAPNQQNNE
0901: ATQRALDAAY NLQKNLARIQ AHAVPEHYEA ELEINDFPQN ARWKITHKET LVPIQEWTGA AITTRGTFIP QGKIVGANER KLYLFIEGPN ESSVKKAKAE
1001: LKRVLEDCAN QALNLPGSAQ TGKYSVL
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.