Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31513 | Canola | nucleus | 92.74 | 98.19 |
| CDY72529 | Canola | cytosol | 47.99 | 90.21 |
| AT1G20920.3 | Thale cress | nucleus | 87.19 | 87.56 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 68.06 | 69.49 |
| KRH77709 | Soybean | nucleus | 64.65 | 68.57 |
| KRH27757 | Soybean | nucleus | 64.13 | 67.84 |
| PGSC0003DMT400011665 | Potato | nucleus | 64.56 | 67.8 |
| Solyc12g098700.1.1 | Tomato | nucleus | 66.01 | 67.39 |
| Bra029779.1-P | Field mustard | nucleus | 50.04 | 66.07 |
| TraesCS2D01G149500.1 | Wheat | nucleus | 45.77 | 64.97 |
| EES14596 | Sorghum | nucleus | 58.24 | 64.22 |
| Zm00001d024533_P001 | Maize | nucleus | 58.33 | 64.13 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 57.22 | 63.87 |
| HORVU0Hr1G020490.1 | Barley | nucleus | 57.13 | 62.76 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 54.74 | 62.41 |
| TraesCS7B01G187000.1 | Wheat | nucleus | 56.45 | 62.18 |
| TraesCS7A01G298800.3 | Wheat | nucleus | 56.7 | 61.94 |
| OQU79814 | Sorghum | nucleus | 51.92 | 61.6 |
| GSMUA_Achr10P... | Banana | cytosol | 50.9 | 59.54 |
| TraesCS2B01G170700.1 | Wheat | nucleus | 50.04 | 57.62 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 48.16 | 55.35 |
| Bra030884.1-P | Field mustard | nucleus | 17.16 | 40.28 |
| Bra035857.1-P | Field mustard | cytosol | 18.87 | 37.39 |
| Bra000447.1-P | Field mustard | cytosol | 21.18 | 36.85 |
| Bra004464.1-P | Field mustard | cytosol | 22.8 | 36.48 |
| Bra018133.1-P | Field mustard | cytosol | 16.91 | 33.67 |
| Bra008471.1-P | Field mustard | cytosol | 16.14 | 33.57 |
| Bra035177.1-P | Field mustard | cytosol | 16.65 | 33.16 |
| Bra003568.1-P | Field mustard | cytosol | 16.48 | 32.66 |
| Bra016869.1-P | Field mustard | cytosol, plastid | 16.91 | 32.51 |
| Bra021872.1-P | Field mustard | nucleus | 18.27 | 32.47 |
| Bra007399.1-P | Field mustard | cytosol | 16.74 | 32.08 |
| Bra003341.1-P | Field mustard | cytosol | 16.57 | 31.8 |
| Bra003343.1-P | Field mustard | cytosol | 17.25 | 31.42 |
| Bra023227.1-P | Field mustard | nucleus | 14.52 | 31.31 |
| Bra035518.1-P | Field mustard | nucleus | 14.26 | 31.16 |
| Bra007402.1-P | Field mustard | cytosol | 16.82 | 30.69 |
| Bra040699.1-P | Field mustard | cytosol | 15.54 | 29.89 |
| Bra001004.1-P | Field mustard | cytosol | 15.88 | 29.25 |
| Bra023478.1-P | Field mustard | cytosol | 16.05 | 27.81 |
| Bra014568.1-P | Field mustard | cytosol | 15.2 | 26.73 |
| Bra001200.1-P | Field mustard | cytosol | 16.74 | 18.63 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | EnsemblPlantsGene:Bra025856 | EnsemblPlants:Bra025856.1 | EnsemblPlants:Bra025856.1-P | ncoils:Coil |
| InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | UniProt:M4EAP7 |
| InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
| PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI000253EFE3 | SEG:seg | : | : |
Description
AT1G20920 (E=0.0) | DEAD box RNA helicase, putative
Coordinates
chrA06:+:8465305..8468820
Molecular Weight (calculated)
134079.0 Da
IEP (calculated)
5.739
GRAVY (calculated)
-1.175
Length
1171 amino acids
Sequence
(BLAST)
(BLAST)
0001: MEVVKSKYRD EDLEVEEEED DLKSSRRDRD RSKERKKERG SDKRREKDRR KRRSERVKSS DDSEDEYGRG DDDDDEERER RKEKERRRRD KERGKRRSER
0101: RKSSDSEDGD EEDDERDKRR VKEKERGHRE HRDKDRKRDR DREREERKEK EREREREKDR VRREREREER EKERLKERER REREREDGER DRREREKERS
0201: RRNRERGRSR EDGHEESDDD VKRDLKRRRR ESGERKEKER EKSVGRSSRH GDSPRRKSVE EDDEKKEKKT REEELEEEQK KLDEEVEKRR RRVQEWQELK
0301: RKKEEAESES KGDTDDKEPK TGKAWTLDGE SDDEEGHPEE NPETEMDVDG ETKPENGADA KMVEAETEMA VTVSEVGGDG AADEEEIDPL DAFMNAMVLP
0401: EVEKLSSSTP PAIEDGILVT KNNGKKSDHQ PKKGFNKSLG RIMQGEDSDS DYSEPKDDDD PSLEEDDEEF MKRVKKTKAE KLALVDHSKI EYEPFRKNFY
0501: IEVKEISRMT QEEVNAYRKE FELKVHGKDV PRPIKSWHQT GLTSKILDTM NKLKYEKPMP IQTQALPIIM SGRDCIGVAK TGSGKTLGFV LPMLRHIKDQ
0601: PPVEAGEGPI GLVMAPTREL VQQIHSDIKK FSKALGIRCV PVYGGSGVAQ QISELKRGTE IVVCTPGRMI DILCTSSGKI TNLRRVTFLV MDEADRMFDM
0701: GFEPQITRII QNIRPDRQTV LFSATFPRQV ETLARKVLNK PIEIQVGGRS VVNKDITQLV EVRPESERFL RLLELLGEWY EKGKILVFVQ SQEKCDALLK
0801: DLFKRSYPCL SLHGGKEQSD RESTISDFKS NVCNILIATS VAARGLDVKD LELVVNYDAP NHYEDYVHRV GRTGRAGRKG CAVTFISEDD AKYAPDLVKA
0901: LELSEQPIPD DLKAIADGFM AKVRQGTEQA HGTGYGGSGF KFNEEEEEVR KAAKKAQAKE YGFEEDKSDS EDENDVVRKA GTVGGDTSQH QAALAHIAAI
1001: AAAAKANAAA MNPPVTTNQL LPNGGGLTSL PGTLPVTVLP NDGAGRAAAM VAAINLQHNL AKIQADAMPE HYEAELEIND FPQNARWKVT HKETLGPISD
1101: WTGAAITTRG QFYPPGRILG PGERKLYLFI EGPTEKSVKT AKVELKRVLE DITNQAMSLP GGSQAGKYSV I
0101: RKSSDSEDGD EEDDERDKRR VKEKERGHRE HRDKDRKRDR DREREERKEK EREREREKDR VRREREREER EKERLKERER REREREDGER DRREREKERS
0201: RRNRERGRSR EDGHEESDDD VKRDLKRRRR ESGERKEKER EKSVGRSSRH GDSPRRKSVE EDDEKKEKKT REEELEEEQK KLDEEVEKRR RRVQEWQELK
0301: RKKEEAESES KGDTDDKEPK TGKAWTLDGE SDDEEGHPEE NPETEMDVDG ETKPENGADA KMVEAETEMA VTVSEVGGDG AADEEEIDPL DAFMNAMVLP
0401: EVEKLSSSTP PAIEDGILVT KNNGKKSDHQ PKKGFNKSLG RIMQGEDSDS DYSEPKDDDD PSLEEDDEEF MKRVKKTKAE KLALVDHSKI EYEPFRKNFY
0501: IEVKEISRMT QEEVNAYRKE FELKVHGKDV PRPIKSWHQT GLTSKILDTM NKLKYEKPMP IQTQALPIIM SGRDCIGVAK TGSGKTLGFV LPMLRHIKDQ
0601: PPVEAGEGPI GLVMAPTREL VQQIHSDIKK FSKALGIRCV PVYGGSGVAQ QISELKRGTE IVVCTPGRMI DILCTSSGKI TNLRRVTFLV MDEADRMFDM
0701: GFEPQITRII QNIRPDRQTV LFSATFPRQV ETLARKVLNK PIEIQVGGRS VVNKDITQLV EVRPESERFL RLLELLGEWY EKGKILVFVQ SQEKCDALLK
0801: DLFKRSYPCL SLHGGKEQSD RESTISDFKS NVCNILIATS VAARGLDVKD LELVVNYDAP NHYEDYVHRV GRTGRAGRKG CAVTFISEDD AKYAPDLVKA
0901: LELSEQPIPD DLKAIADGFM AKVRQGTEQA HGTGYGGSGF KFNEEEEEVR KAAKKAQAKE YGFEEDKSDS EDENDVVRKA GTVGGDTSQH QAALAHIAAI
1001: AAAAKANAAA MNPPVTTNQL LPNGGGLTSL PGTLPVTVLP NDGAGRAAAM VAAINLQHNL AKIQADAMPE HYEAELEIND FPQNARWKVT HKETLGPISD
1101: WTGAAITTRG QFYPPGRILG PGERKLYLFI EGPTEKSVKT AKVELKRVLE DITNQAMSLP GGSQAGKYSV I
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.