Factsheet for Bra007399.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06034	Canola	cytosol	93.45	99.3
CDX71948	Canola	cytosol	95.58	97.82
Bra003341.1-P	Field mustard	cytosol	90.18	90.33
AT3G58510.2	Thale cress	cytosol	87.56	87.42
Bra016869.1-P	Field mustard	cytosol, plastid	83.96	84.24
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	77.25	75.88
Bra003343.1-P	Field mustard	cytosol	77.74	73.87
Solyc03g052980.2.1	Tomato	nucleus	73.16	73.04
PGSC0003DMT400002828	Potato	cytosol	73.32	72.49
KRH38030	Soybean	endoplasmic reticulum	72.34	72.34
Bra007402.1-P	Field mustard	cytosol	75.45	71.81
KRH71800	Soybean	plastid	71.03	71.03
TraesCS4B01G126000.1	Wheat	cytosol, plastid	68.58	69.72
TraesCS4D01G148700.1	Wheat	golgi	68.41	69.55
HORVU4Hr1G031280.1	Barley	cytosol, plastid	68.41	69.55
Os11t0599500-00	Rice	nucleus, plasma membrane	70.21	68.86
Zm00001d048924_P001	Maize	plasma membrane	67.92	68.26
KXG28851	Sorghum	cytosol, plastid	68.41	66.88
TraesCS4A01G141400.1	Wheat	plastid	68.58	63.87
Bra014568.1-P	Field mustard	cytosol	62.03	56.91
Bra030884.1-P	Field mustard	nucleus	29.13	35.67
Bra035857.1-P	Field mustard	cytosol	33.72	34.86
Bra035518.1-P	Field mustard	nucleus	28.48	32.46
Bra040699.1-P	Field mustard	cytosol	32.24	32.35
Bra001004.1-P	Field mustard	cytosol	33.55	32.23
Bra023227.1-P	Field mustard	nucleus	28.48	32.04
Bra023478.1-P	Field mustard	cytosol	33.39	30.18
Bra035177.1-P	Field mustard	cytosol	28.15	29.25
Bra018133.1-P	Field mustard	cytosol	28.15	29.25
Bra008471.1-P	Field mustard	cytosol	26.84	29.13
Bra000447.1-P	Field mustard	cytosol	31.75	28.83
Bra003568.1-P	Field mustard	cytosol	27.66	28.6
Bra021872.1-P	Field mustard	nucleus	30.61	28.38
Bra004464.1-P	Field mustard	cytosol	32.9	27.46
Bra029779.1-P	Field mustard	nucleus	30.11	20.74
Bra001200.1-P	Field mustard	cytosol	33.72	19.58
Bra025856.1-P	Field mustard	nucleus	32.08	16.74

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra007399	EnsemblPlants:Bra007399.1	EnsemblPlants:Bra007399.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:M4CT57
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0002542DDB	SEG:seg	:	:	:	:

Description

AT3G58510 (E=2e-250) | DEAD box RNA helicase, putative (RH11)

Coordinates

chrA09:+:28999894..29002459

Molecular Weight (calculated)

65664.1 Da

IEP (calculated)

7.104

GRAVY (calculated)

-0.509

Length

611 amino acids

Sequence
(BLAST)

001: MSTSWADVAD SDNAASRAKP AYVPPHLRNR QSEPAAPLPG NDRGGGYGGQ PSRWAPGGGG GGGGYRADAG RTGYAYGGRG STGGGGGWNN RGGGGGGGWD
101: REVNPFGDDV DLEPAFTEQE NTGINFDAYE DIPIETSGGD VPPPVNTFAE IDLGEALNLN IRRCKYVRPT PVQRHAIPIL LAQRDLMACA QTGSGKTAAF
201: CFPIISGILR DQNPQRPRGS RTVYPLAVIL SPTRELASQI HDEAKKFSYQ TGVKVVVAYG GTPINQQLRE LERGVDILVA TPGRLNDLLE RARVSMQMIK
301: FLALDEADRM LDMGFEPQIR KIVEEMDMPP RGMRQTMLFS ATFPREIQRL AADFLANYIF LAVGRVGSST DLIAQRVEFV HESDKKSHLM DLLHAQRDTG
401: NHDKQSLTLV FVETKRGADS LENWLCMNDF PATTIHGDRT QQEREVALKS FKSGRTPILV ATDVAARGLD IPHVAHVVNF DLPNDIDDYV HRIGRTGRAG
501: KSGVATAFFN EKNAQLARQL AELMQEANQE VPEWLTRYAS RASFGGGKKR SGGRFCGRDF RREGSYGGRG GGSGGGGNDY YGGGGGGGYG GGGYGGAPSG
601: GYGGQVTSAW D

Best Arabidopsis Sequence Match ( AT3G58510.2 )
(BLAST)

001: MSASWADVAD SEKAVSQSKP PYVPPHLRNR PSEPVAAPLP QNDHAGYGGQ PAGSRWAPPS SGGGGASGGG YRNDGGRTGY GYGAGGGGGG GGGWNNRSGG
101: WDRREREVNP FGDDAELEPV FTEQENTGIN FDAYEDIPVE TSGGDVPPPV NTFADIDLGD ALNLNIRRCK YVRPTPVQRH AIPILLAERD LMACAQTGSG
201: KTAAFCFPII SGIMKDQHVE RPRGSRAVYP FAVILSPTRE LACQIHDEAK KFSYQTGVKV VVAYGGTPIH QQLRELERGC DILVATPGRL NDLLERARVS
301: MQMIRFLALD EADRMLDMGF EPQIRKIVEQ MDMPPRGVRQ TMLFSATFPS QIQRLAADFM SNYIFLAVGR VGSSTDLITQ RVEFVQESDK RSHLMDLLHA
401: QRETQDKQSL TLVFVETKRG ADTLENWLCM NEFPATSIHG DRTQQEREVA LRSFKTGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID DYVHRIGRTG
501: RAGKSGIATA FFNENNAQLA RSLAELMQEA NQEVPEWLTR YASRASFGGG KKRSGGRFGG RDFRREGSYS RGGGGGGGGG GSDYYGGGGY GGGGYGGAPS
601: GGYGAGVTSA WD

Arabidopsis Description

RH11DEAD-box ATP-dependent RNA helicase 11 [Source:UniProtKB/Swiss-Prot;Acc:Q8LA13]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.