Factsheet for Bra018133.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY39973	Canola	cytosol	87.07	98.84
Bra035177.1-P	Field mustard	cytosol	98.64	98.64
Bra008471.1-P	Field mustard	cytosol	91.16	95.2
AT5G51280.1	Thale cress	cytosol	93.2	92.72
Bra003568.1-P	Field mustard	cytosol	89.29	88.83
AT4G33370.1	Thale cress	cytosol	79.25	85.98
VIT_09s0002g08120.t01	Wine grape	cytosol	85.71	85.86
KRH68534	Soybean	cytosol	85.2	85.35
PGSC0003DMT400036663	Potato	cytosol	85.37	85.23
KRG94409	Soybean	cytosol	84.86	84.86
Solyc03g117440.2.1	Tomato	cytosol, nucleus	85.54	84.54
PGSC0003DMT400073340	Potato	cytosol	83.84	83.7
Os02t0150100-02	Rice	cytosol	65.48	83.7
Solyc06g068280.2.1	Tomato	extracellular, nucleus	84.01	83.03
GSMUA_Achr2P09160_001	Banana	cytosol	74.15	79.71
TraesCS3B01G141300.1	Wheat	cytosol	77.89	74.59
HORVU5Hr1G048040.1	Barley	plastid	71.94	73.95
Zm00001d047502_P001	Maize	extracellular	76.87	73.14
EER92293	Sorghum	cytosol	76.19	72.49
HORVU3Hr1G022710.1	Barley	mitochondrion	77.38	71.32
TraesCS5B01G152200.1	Wheat	cytosol	73.64	71.1
TraesCS5D01G159000.1	Wheat	cytosol	73.47	71.05
TraesCS5A01G153700.1	Wheat	cytosol	70.41	71.01
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	77.72	69.45
Os06t0697200-00	Rice	cytosol	72.28	68.66
GSMUA_Achr1P13820_001	Banana	mitochondrion	63.1	68.45
Bra030884.1-P	Field mustard	nucleus	28.4	33.47
Bra035857.1-P	Field mustard	cytosol	31.12	30.96
Bra035518.1-P	Field mustard	nucleus	27.04	29.66
Bra023227.1-P	Field mustard	nucleus	27.04	29.28
Bra000447.1-P	Field mustard	cytosol	33.33	29.12
Bra003341.1-P	Field mustard	cytosol	29.59	28.52
Bra016869.1-P	Field mustard	cytosol, plastid	29.25	28.24
Bra007399.1-P	Field mustard	cytosol	29.25	28.15
Bra004464.1-P	Field mustard	cytosol	34.18	27.46
Bra021872.1-P	Field mustard	nucleus	30.27	27.01
Bra040699.1-P	Field mustard	cytosol	27.89	26.93
Bra007402.1-P	Field mustard	cytosol	29.25	26.79
Bra003343.1-P	Field mustard	cytosol	29.25	26.75
Bra001004.1-P	Field mustard	cytosol	28.06	25.94
Bra023478.1-P	Field mustard	cytosol	26.87	23.37
Bra014568.1-P	Field mustard	cytosol	26.19	23.12
Bra029779.1-P	Field mustard	nucleus	30.95	20.52
Bra025856.1-P	Field mustard	nucleus	33.67	16.91
Bra001200.1-P	Field mustard	cytosol	28.91	16.16

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	Gene3D:4.10.60.10	EnsemblPlantsGene:Bra018133	EnsemblPlants:Bra018133.1	EnsemblPlants:Bra018133.1-P
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488
GO:GO:0005524	GO:GO:0008270	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878
InterPro:IPR014001	InterPro:IPR014014	UniProt:M4DNP6	InterPro:P-loop_NTPase	PFAM:PF00098	PFAM:PF00270
PFAM:PF00271	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
SUPFAM:SSF57756	UniParc:UPI000253F3F9	InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:

Description

AT5G51280 (E=1e-293) | DEAD-box protein abstrakt, putative

Coordinates

chrA06:+:10495364..10497471

Molecular Weight (calculated)

65655.2 Da

IEP (calculated)

6.528

GRAVY (calculated)

-0.227

Length

588 amino acids

Sequence
(BLAST)

001: MEVDDDYVEY VPVAKRRAME EQKILQRKGK VLEVEEEASE KEKLAESKPS LLVQATQLKR DVPEVSATEQ IILQEKEMME HLSDKKTLMS VRELAKGITY
101: TEPLSTGWKP PLRIRKMSSK QMDLIRKQWH IIVSGEDIPP PIKSFEDMKF EKPILDTLRE KGIVQPTPIQ VQGLPVILSG RDMIGIAFTG SGKTMVFVLP
201: MIMIALQEEM MMPIGPGEGP IGLIVCPSRE LARQTYEVVE QFVAPLVKAG FAPLRSLLCI GGVDMRSQLD VVKRGVHIVV ATPGRLKDLL AKKKMNLDAC
301: RYLTLDEADR LVDLGFEDDI REVFDHFKSQ RQTLLFSATM PTKIQIFARS ALVKPVTVNV GRAGAANLDV IQEVEYVKQE AKIVYLLECL QKTSPPVLIF
401: CENKADVDDI HEYLLLKGVE AVAIHGGKDQ EDREYAISSF KAGKKDVLVA TDVASKGLDF PDIQHVINYD MPAEIENYVH RIGRTGRCGK TGIATTFINK
501: NQSETTLLDL KHLLQEAKQR IPPVLAELKD PMEEAENIAN ASGVKGCAYC GGLGHRIRDC PKLEQQKSVA ISNSRKDYFG SGGYRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.