Factsheet for Zm00001d047502_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

cytosol 2
mitochondrion 1
plastid 1
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	plastid
WoLF PSORT:	endoplasmic reticulum
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER92293	Sorghum	cytosol	97.09	97.09
Os02t0150100-02	Rice	cytosol	70.23	94.35
TraesCS3B01G141300.1	Wheat	cytosol	85.11	85.67
HORVU3Hr1G022710.1	Barley	mitochondrion	85.44	82.76
HORVU5Hr1G048040.1	Barley	plastid	75.73	81.82
TraesCS5B01G152200.1	Wheat	cytosol	79.94	81.12
TraesCS5D01G159000.1	Wheat	cytosol	79.45	80.76
KRH68534	Soybean	cytosol	76.54	80.58
TraesCS5A01G153700.1	Wheat	cytosol	75.89	80.45
TraesCS3A01G122100.1	Wheat	mitochondrion, plastid	85.6	80.4
KRG94409	Soybean	cytosol	76.38	80.27
CDY39973	Canola	cytosol	66.67	79.54
VIT_09s0002g08120.t01	Wine grape	cytosol	75.4	79.39
CDY61276	Canola	cytosol	66.67	79.38
CDY38671	Canola	cytosol	66.5	79.19
CDX87315	Canola	cytosol	66.34	79.15
PGSC0003DMT400036663	Potato	cytosol	74.6	78.27
Solyc03g117440.2.1	Tomato	cytosol, nucleus	74.76	77.65
PGSC0003DMT400073340	Potato	cytosol	73.95	77.59
GSMUA_Achr2P09160_001	Banana	cytosol	68.28	77.15
Bra018133.1-P	Field mustard	cytosol	73.14	76.87
Solyc06g068280.2.1	Tomato	extracellular, nucleus	73.95	76.81
AT5G51280.1	Thale cress	cytosol	73.3	76.65
Bra008471.1-P	Field mustard	cytosol	69.74	76.55
Bra035177.1-P	Field mustard	cytosol	72.17	75.85
CDX67949	Canola	cytosol	66.34	75.37
AT4G33370.1	Thale cress	cytosol	65.86	75.09
Bra003568.1-P	Field mustard	cytosol	70.23	73.43
GSMUA_Achr1P13820_001	Banana	mitochondrion	59.55	67.9
CDX79384	Canola	cytosol	41.1	65.13
Zm00001d039452_P002	Maize	cytosol	28.48	31.83
Zm00001d019449_P004	Maize	nucleus	24.92	30.32
Zm00001d048924_P001	Maize	plasma membrane	27.67	28.12
Zm00001d036897_P001	Maize	extracellular	27.83	28.01
Zm00001d042416_P002	Maize	extracellular, plasma membrane	27.18	26.33
Zm00001d007755_P001	Maize	plastid	27.35	26.12
Zm00001d007757_P004	Maize	plastid	27.35	25.53
Zm00001d047633_P002	Maize	nucleus	31.39	25.26
Zm00001d028898_P011	Maize	cytosol	31.23	25.06
Zm00001d008725_P003	Maize	cytosol	27.51	24.53
Zm00001d033704_P007	Maize	extracellular	27.99	23.44
Zm00001d013453_P001	Maize	nucleus	27.83	23.43
Zm00001d039673_P002	Maize	cytosol	26.54	23.4
Zm00001d044510_P002	Maize	mitochondrion	27.02	20.82
Zm00001d011155_P012	Maize	nucleus	26.38	20.82
Zm00001d024533_P001	Maize	nucleus	31.55	18.31
Zm00001d007719_P010	Maize	cytosol	28.48	13.01
Zm00001d048632_P001	Maize	cytosol	28.16	12.59

Protein Annotations

EntrezGene:100281463	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:AQL06787.1	EMBL:BT084880	UniProt:C4J233
ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0008270	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR001878	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	PFscan:PS50158	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF542	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00343	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	SUPFAM:SSF57756	UniParc:UPI0001890913	EnsemblPlantsGene:Zm00001d047502	EnsemblPlants:Zm00001d047502_P001	EnsemblPlants:Zm00001d047502_T001
InterPro:Znf_CCHC	InterPro:Znf_CCHC_sf	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 35

Coordinates

chr9:+:132769329..132772423

Molecular Weight (calculated)

68530.3 Da

IEP (calculated)

7.284

GRAVY (calculated)

-0.266

Length

618 amino acids

Sequence
(BLAST)

001: MSAIAASSAA AAAASNSDEE ENYEEYIPVA KRRAMEAERL RQLRLSKSAP ASAVSSLPMP PPPPLLPAQT SVPDAAAKPS LLVKATQLKR AAPEVTATEQ
101: RIQQEKEVIE NLSDNKSLRS VREIAKGIIY TEPIQTGWKP PLRLRRMPLA KANEFRRKWH IIVDGDDIPP PARDFRDLRL PEPMLRKLRE RGIVQPTPIQ
201: VQGLPVVLSG RDMIGIAFTG SGKTLVFVLP LIMVALQEES LMPIVPGEGP FGMIICPSRE LAKQTYDVIE QFLIPLKEAG YPEIRHLLCI GGVDMRTQLD
301: VLKKGVHIVV ATPGRLKDLL AKKKMNLDNC RYLTLDEADR LVDLGFEDDI KEVFDHFKDQ RQTLLFSATM PQKIQNFAKN ALVKPVTVNV GRAGAANLDV
401: IQEVEYVKED ARIIYLLECL QKTPPPVLIF CENKADVDYI HEYLLLKGVE AVAIHGGKDQ EERQNAIDSF KTGRKDVLVA TDVASKGLDF PDIQHVINYD
501: MPAEIENYVH RIGRTGRCGK TGIATTFINK NQTETTLLDL KHLLKEAKQR IPPVLAELND PLDDEEIIAK ESGVKGCAYC GGLGHRVSDC PKLEHQKSMA
601: IAGSRKDYFG GGGYRGEI

Best Arabidopsis Sequence Match ( AT5G51280.1 )
(BLAST)

001: MESIMEEADS YIEYVSVAER RAIAAQKILQ RKGKASELEE EADKEKLAEA KPSLLVQATQ LKRDVPEVSA TEQIILQEKE MMEHLSDKKT LMSVRELAKG
101: ITYTEPLLTG WKPPLHIRKM SSKQRDLIRK QWHIIVNGDD IPPPIKNFKD MKFPRPVLDT LKEKGIVQPT PIQVQGLPVI LAGRDMIGIA FTGSGKTLVF
201: VLPMIMIALQ EEMMMPIAAG EGPIGLIVCP SRELARQTYE VVEQFVAPLV EAGYPPLRSL LCIGGIDMRS QLEVVKRGVH IVVATPGRLK DMLAKKKMSL
301: DACRYLTLDE ADRLVDLGFE DDIREVFDHF KSQRQTLLFS ATMPTKIQIF ARSALVKPVT VNVGRAGAAN LDVIQEVEYV KQEAKIVYLL ECLQKTSPPV
401: LIFCENKADV DDIHEYLLLK GVEAVAIHGG KDQEDREYAI SSFKAGKKDV LVATDVASKG LDFPDIQHVI NYDMPAEIEN YVHRIGRTGR CGKTGIATTF
501: INKNQSETTL LDLKHLLQEA KQRIPPVLAE LNDPMEEAET IANASGVKGC AYCGGLGHRI RDCPKLEHQK SVAISNSRKD YFGSGGYRGE I

Arabidopsis Description

RH35DEAD-box ATP-dependent RNA helicase 35 [Source:UniProtKB/Swiss-Prot;Acc:Q9LU46]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.