Factsheet for Zm00001d036897_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU76674	Sorghum	cytosol	78.5	85.01
Os06t0602400-01	Rice	nucleus, plasma membrane	62.54	79.34
HORVU7Hr1G084210.1	Barley	cytosol	65.8	66.23
TraesCS7A01G374000.1	Wheat	nucleus	70.68	61.39
Zm00001d048924_P001	Maize	plasma membrane	50.16	50.66
KRH20283	Soybean	plastid	47.72	50.0
Zm00001d007755_P001	Maize	plastid	52.28	49.61
VIT_11s0016g05090.t01	Wine grape	cytosol	49.51	49.59
KRH03709	Soybean	plastid	48.21	48.52
Zm00001d007757_P004	Maize	plastid	52.12	48.34
GSMUA_Achr5P06030_001	Banana	nucleus	47.39	40.47
Zm00001d039452_P002	Maize	cytosol	30.94	34.36
Zm00001d019449_P004	Maize	nucleus	28.34	34.25
Zm00001d008725_P003	Maize	cytosol	33.39	29.58
Zm00001d042416_P002	Maize	extracellular, plasma membrane	30.46	29.31
Zm00001d039673_P002	Maize	cytosol	32.9	28.82
Zm00001d047502_P001	Maize	extracellular	28.01	27.83
Zm00001d011155_P012	Maize	nucleus	34.36	26.95
Zm00001d044510_P002	Maize	mitochondrion	34.2	26.18
Zm00001d013453_P001	Maize	nucleus	30.13	25.2
Zm00001d033704_P007	Maize	extracellular	29.97	24.93
Zm00001d028898_P011	Maize	cytosol	30.78	24.55
Zm00001d047633_P002	Maize	nucleus	30.46	24.35
Zm00001d048632_P001	Maize	cytosol	37.3	16.57
Zm00001d024533_P001	Maize	nucleus	28.34	16.34
Zm00001d007719_P010	Maize	cytosol	35.99	16.33

Protein Annotations

EntrezGene:100191727	Gene3D:3.40.50.300	MapMan:35.1	ProteinID:AQK82336.1	UniProt:B4F9Y2	EMBL:BT033920
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00017B60AD	EnsemblPlantsGene:Zm00001d036897
EnsemblPlants:Zm00001d036897_P001	EnsemblPlants:Zm00001d036897_T001	SEG:seg	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 52

Coordinates

chr6:-:105871023..105877198

Molecular Weight (calculated)

64617.2 Da

IEP (calculated)

9.497

GRAVY (calculated)

-0.409

Length

614 amino acids

Sequence
(BLAST)

001: MAAYGGGPWS TVPARSRRAE PIAPSPRGGS RGGGDDRVPG VGELAEAVDG LEIGGDGERR LDKYDMPVDV SGKGAPGPAD GFEAAGLAEA VLRNVARCGY
101: ESPTPVQRYA MPIVMAGRDL MACAQTGSGK TAAFCLPVVS GLVAPAGGGN GHGPRDRGSF DRVAAKPRAL VLAPTRELAA QINEEAKKFS FQTGLRVVVA
201: YGGTPMFSQL RDLEKGVDLL VATPGRLVDL VERSRISLEA IKYLVMDEAD RMLNMGFEPQ IRKIVDMMNM PKKSVRQTML FSATFPPEIQ RLATDFLHNY
301: IFVTVGRVGS STDLIDQKIE FVNGGEKRGF LLDILQKQSV GLSKNKQPLT LVFVETKREA DSLQYCLQSN GFSATSIHGD RTQQERERAL KSFKSGATPI
401: LVATDVASRG LDVPNVAHVI NYDLPKSIDD YVHRIGRTGR AGKAGKATAL FTESNHHLAK DLLELMTGAK QDVPEWLGDY ASRPCSGGSS YGGRGRRGGG
501: GFGGRDYRLS SDYGYGGNGG VYSSSGSSYS GGGGGYSSRG GGYSGRGGGY ASRGGGYSGG ASRGGGYSGG RGDYYRGGSR GGGGSDGSYR QSAPPLPYPS
601: YPRAAADISA SGWD

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.