Factsheet for Zm00001d007755_P001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
MultiLoc:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG34634	Sorghum	plastid	94.75	94.89
Zm00001d007757_P004	Maize	plastid	96.91	94.71
Os07t0202100-01	Rice	nucleus	84.7	85.89
GSMUA_Achr8P15350_001	Banana	plastid	68.78	75.04
GSMUA_Achr6P29700_001	Banana	plastid	65.07	72.84
GSMUA_Achr5P14880_001	Banana	cytosol, plastid	68.01	72.61
Zm00001d048924_P001	Maize	plasma membrane	65.53	69.74
GSMUA_Achr4P17320_001	Banana	plastid	52.24	66.27
GSMUA_Achr9P25390_001	Banana	mitochondrion	43.59	62.95
Zm00001d036897_P001	Maize	extracellular	49.61	52.28
Zm00001d039452_P002	Maize	cytosol	28.28	33.09
Zm00001d019449_P004	Maize	nucleus	25.35	32.28
Zm00001d042416_P002	Maize	extracellular, plasma membrane	30.45	30.88
Zm00001d008725_P003	Maize	cytosol	31.38	29.29
Zm00001d039673_P002	Maize	cytosol	31.22	28.82
Zm00001d047502_P001	Maize	extracellular	26.12	27.35
Zm00001d011155_P012	Maize	nucleus	32.61	26.95
Zm00001d044510_P002	Maize	mitochondrion	32.3	26.06
Zm00001d013453_P001	Maize	nucleus	29.37	25.89
Zm00001d033704_P007	Maize	extracellular	29.52	25.88
Zm00001d047633_P002	Maize	nucleus	30.14	25.39
Zm00001d028898_P011	Maize	cytosol	29.98	25.19
Zm00001d024533_P001	Maize	nucleus	29.68	18.03
Zm00001d048632_P001	Maize	cytosol	35.39	16.57
Zm00001d007719_P010	Maize	cytosol	33.69	16.11

Protein Annotations

EntrezGene:100279527	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A096RF51	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166
GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524
GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014
ProteinID:ONM27502.1	ProteinID:ONM27503.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0002210CFF	EnsemblPlantsGene:Zm00001d007755	EnsemblPlants:Zm00001d007755_P001	EnsemblPlants:Zm00001d007755_T001
SEG:seg	:	:	:	:	:

Description

DEAD-box ATP-dependent RNA helicase 52

Coordinates

chr2:+:238907427..238912507

Molecular Weight (calculated)

68374.3 Da

IEP (calculated)

8.536

GRAVY (calculated)

-0.408

Length

647 amino acids

Sequence
(BLAST)

001: MRSSWADSVA NAEESAPATA AANGSVATHS TSRPTRSSYV PPHLRGRSAG AAVEAQAGLV APAQGGPLPL AAAQPSGQGA AVGGPRWAGI VNGGGGGGSI
101: GAPRQGHGGG GGGRGAWNSR PGGWDRRDRE PDPFAKAEAE EIDFDGQENT GINFDAYEDI PVETSGHDVP APVNTFAEID LGDALNDNIR RCKYVKPTPV
201: QRYAIPISIA GRDLMACAQT GSGKTAAFCF PIISGILKSP KPHQRSRSTR TACPLALILS PTRELSVQIH EEARKFAYQT GVRVVVAYGG APITNQLREL
301: ERGVEILVAT PGRLMDLLER ARVSLQMIKY LALDEADRML DMGFEPQIRK IVEGMDMPQR GERQTMLFSA TFPKEIQRMA ADFLADYIFL AVGRVGSSTD
401: LIVQRVEFVL DSDKRSYLMD LLHAQKANGT HGKHALTLVF VETKRGADAL EDWLFRNGFP ATSIHGDRTQ QEREHALRSF KSGATPILVA TDVAARGLDI
501: PHVAHVINFD LPNDIDDYVH RIGRTGRAGK SGLATAFFNE SNTTLARPLS DLMKEANQEV PKWLEGYAAR SAYGGGGGRN RRQGSSARFG GRDFRRDRGS
601: GGGYGGGSYG GGGGGGYGGS SGYGGAYGGG GSGGGGYGGG QSTSSWD

Best Arabidopsis Sequence Match ( AT2G42520.3 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.