Factsheet for Zm00001d047633_P002

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

mitochondrion 3
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

nucleus: 24677780

msms PMID: 24677780 doi

B Guo, Y Chen, C Li, T Wang, R Wang, B Wang, S Hu, X Du, H Xing, X Song, Y Yao, Q Sun, Z Ni

State Key Laboratory for Agrobiotechnology, Key Laboratory of Crop Heterosis and Utilization (MOE), Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University, Beijing, China; National Plant Gene Research Centre (Beijing), Beijing, China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	95.96	96.21
Zm00001d028898_P011	Maize	cytosol	93.75	93.51
Os03t0308500-01	Rice	mitochondrion	89.06	88.83
TraesCS4A01G121700.1	Wheat	mitochondrion	86.33	86.44
TraesCS4B01G181800.1	Wheat	nucleus	86.07	86.29
TraesCS4D01G184200.1	Wheat	mitochondrion	87.24	84.92
HORVU4Hr1G053550.2	Barley	mitochondrion	85.68	82.87
GSMUA_Achr1P24870_001	Banana	cytosol	64.32	74.51
GSMUA_Achr1P13000_001	Banana	cytosol	67.19	74.35
CDX83333	Canola	nucleus	61.59	74.25
VIT_07s0005g01600.t01	Wine grape	cytosol	73.57	73.28
KRG96540	Soybean	cytosol, mitochondrion	72.66	72.66
CDX80096	Canola	cytosol	68.1	71.84
Bra004464.1-P	Field mustard	cytosol	68.1	71.45
CDY37796	Canola	cytosol	67.84	70.98
CDX95719	Canola	cytosol	67.84	70.88
KRH68277	Soybean	nucleus	72.14	70.84
AT2G47330.1	Thale cress	cytosol	69.92	70.66
Bra000447.1-P	Field mustard	cytosol	61.72	70.43
PGSC0003DMT400023277	Potato	cytosol	70.31	69.77
Solyc01g079330.2.1	Tomato	nucleus	70.05	69.51
Zm00001d039452_P002	Maize	cytosol	28.26	39.24
Zm00001d042416_P002	Maize	extracellular, plasma membrane	28.26	34.01
Zm00001d019449_P004	Maize	nucleus	21.88	33.07
Zm00001d048924_P001	Maize	plasma membrane	25.52	32.24
Zm00001d047502_P001	Maize	extracellular	25.26	31.39
Zm00001d036897_P001	Maize	extracellular	24.35	30.46
Zm00001d007755_P001	Maize	plastid	25.39	30.14
Zm00001d007757_P004	Maize	plastid	25.39	29.46
Zm00001d008725_P003	Maize	cytosol	25.26	27.99
Zm00001d039673_P002	Maize	cytosol	24.87	27.25
Zm00001d013453_P001	Maize	nucleus	25.26	26.43
Zm00001d033704_P007	Maize	extracellular	25.26	26.29
Zm00001d024533_P001	Maize	nucleus	34.24	24.69
Zm00001d011155_P012	Maize	nucleus	24.87	24.39
Zm00001d044510_P002	Maize	mitochondrion	24.74	23.69
Zm00001d007719_P010	Maize	cytosol	27.99	15.89
Zm00001d048632_P001	Maize	cytosol	27.99	15.56

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	ProteinID:AQL07144.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	UniProt:K7WE31
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194
PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000222072B	EnsemblPlantsGene:Zm00001d047633	EnsemblPlants:Zm00001d047633_P002	EnsemblPlants:Zm00001d047633_T002
SEG:seg	:	:	:	:	:

Description

Putative DEAD-box ATP-dependent RNA helicase family protein

Coordinates

chr9:-:137595058..137599888

Molecular Weight (calculated)

83484.4 Da

IEP (calculated)

6.372

GRAVY (calculated)

-0.432

Length

768 amino acids

Sequence
(BLAST)

001: MSKRPKLEGF SIPRPTSYNF ERSQPVQRLY RPTDDPDLDD IAFSDDAPSD APAGTAVDGK AEHDEEIDPL DAFMAEIQEE IRAPPPPPKA EALRRADSGD
101: DEDDPVESFL RAKKDAGLTL AADAMRAGYD SDEEVYAAAK AVDAGMMEYD SDDNPIVVDK KTIEPIPALD HSTIEYDTFT KDFYEEKPSI SGMSDQEVAD
201: YMKSLAIRVS GFDVPRPIKN FEDCGFPVPL MNAIAKQAYQ KPTTIQCQAL PIVLSGRDII GIAKTGSGKT AAFVLPMIVH IMDQPELEKE EGPIGVICAP
301: TRELAHQIYL EAKKFAKPYN LRVAAVYGGV SKFDQFKELK AGCEVVIATP GRLIDLLKMK ALKMFRATYL VLDEADRMFD LGFEPQIRSI VGQIRPGRQT
401: LLFSATMPYK VERLAREILT DPIRVTVGQV GGANEDIKQV VNVIPSDAEK MPWLLEKLPG MIDDGDVLVF ASKKARVDEI ERELNQRGFR IAALHGDKDQ
501: ASRMETLQKF KSGTYHVLVA TDVAARGLDI KSIKTVVNFD IAKEMDMHIH RIGRTGRAGD KDGTAYTLIT QKEARFAGEL VQSLIAAGQD VPNELMDLAM
601: KDVRFRAKRD SRKGGKKGGK GKGGVGGGAG RGRGVRGVDF GLGIGYNAES GSQVPAPRSA AINSLKTGVM QQFKSSFVSG SSNTPSSSAP SLVRPALRGF
701: VSGGTIGGDT RPAQPAPTFV TASWPAQAAP SVPASRPAAG NNNENGNPNP KSSRDRPRER KRPSGWDR

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.