Factsheet for VIT_07s0005g01600.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG96540	Soybean	cytosol, mitochondrion	82.23	82.55
PGSC0003DMT400023277	Potato	cytosol	81.45	81.14
GSMUA_Achr1P24870_001	Banana	cytosol	69.39	80.69
KRH68277	Soybean	nucleus	81.84	80.69
Solyc01g079330.2.1	Tomato	nucleus	80.8	80.49
GSMUA_Achr1P13000_001	Banana	cytosol	70.56	78.39
CDX83333	Canola	nucleus	63.94	77.39
AT2G47330.1	Thale cress	cytosol	74.71	75.79
CDX95719	Canola	cytosol	71.21	74.69
CDY37796	Canola	cytosol	71.08	74.66
Bra004464.1-P	Field mustard	cytosol	70.82	74.59
CDX80096	Canola	cytosol	70.43	74.59
Os03t0308500-01	Rice	mitochondrion	74.45	74.55
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	74.06	74.54
Zm00001d028898_P011	Maize	cytosol	73.67	73.77
Zm00001d047633_P002	Maize	nucleus	73.28	73.57
Bra000447.1-P	Field mustard	cytosol	64.2	73.55
TraesCS4A01G121700.1	Wheat	mitochondrion	72.37	72.75
TraesCS4B01G181800.1	Wheat	nucleus	72.11	72.58
TraesCS4D01G184200.1	Wheat	mitochondrion	72.5	70.85
HORVU4Hr1G053550.2	Barley	mitochondrion	71.85	69.77
VIT_09s0002g02100.t01	Wine grape	cytosol	28.27	42.33
VIT_06s0004g08160.t01	Wine grape	plastid	25.29	34.33
VIT_09s0002g08120.t01	Wine grape	cytosol	25.94	34.07
VIT_06s0004g00850.t01	Wine grape	cytosol	16.73	33.77
VIT_11s0016g05090.t01	Wine grape	cytosol	25.42	31.97
VIT_13s0156g00070.t01	Wine grape	cytosol	25.55	31.93
VIT_08s0007g07070.t01	Wine grape	cytosol, plastid	25.42	31.51
VIT_17s0000g09130.t01	Wine grape	cytosol	23.99	30.28
VIT_09s0054g01810.t01	Wine grape	cytosol	25.29	27.5
VIT_03s0038g00010.t01	Wine grape	cytosol	25.29	27.39
VIT_02s0109g00380.t01	Wine grape	cytosol	22.18	27.23
VIT_03s0038g04130.t01	Wine grape	nucleus	34.63	23.28
VIT_14s0066g01020.t01	Wine grape	cytosol	25.03	22.36
VIT_05s0020g00470.t01	Wine grape	cytosol	27.5	18.39

Protein Annotations

EntrezGene:100241725	wikigene:100241725	Gene3D:3.40.50.300	MapMan:35.1	EMBL:AM459847	ProteinID:CAN74586
ProteinID:CAN74586.1	ProteinID:CBI36962	ProteinID:CBI36962.3	UniProt:D7U2J6	InterPro:DEAD/DEAH_box_helicase_dom	EMBL:FN596502
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	EntrezGene:LOC100241725	wikigene:LOC100241725	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00015CA2D2
ArrayExpress:VIT_07s0005g01600	EnsemblPlantsGene:VIT_07s0005g01600	EnsemblPlants:VIT_07s0005g01600.t01	unigene:Vvi.12011	RefSeq:XP_002277419	RefSeq:XP_002277419.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr7:+:4093932..4099857

Molecular Weight (calculated)

84303.9 Da

IEP (calculated)

5.852

GRAVY (calculated)

-0.516

Length

771 amino acids

Sequence
(BLAST)

001: MSKRKFGFEG FGINRPATYN FERSQAPQRL YVPPSSRSGG HDNYEDHDLD NIDYDDKDEH GEVAGGGGEV DDGEIDPLDA FMEGIHEEMR APPPPKLVEK
101: AEKYVDDDED DPMESFLRAK KDTGLALAAD VMHAGYDSDE EVYAAAKAVD AGLIEYDSDD NPIVLDKKKI EPIPALDHSS IEYEPFNKDF YEEKDSISGM
201: TEQDVTEYRK SLSIRVSGFD VPRPIKTFED CGFSPQLMNA ITKQGYEKPT PIQCQAFPIV LSGRDIIGIA KTGSGKTAAF VLPMIVHIMD QPELAKEEGP
301: IGVICAPTRE LAHQIYLESK KFAKPYGIRV SAIYGGMSKL EQFKELKSGC EIVIATPGRL IDMIKMKALT MLRATYLVLD EADRMFDLGF EPQIRSIVGQ
401: IRPDRQTLLF SATMPRKVEK LAREILTDPV RVTVGEVGMA NEDITQVVQV IPSDAEKLPW LLDKLPGMID DGDVLVFASK KATVDEIESQ LGQKGLKIAA
501: LHGDKDQASR MDILQKFKSG IYHVLIATDV AARGLDIKSI KSVVNFDIAR DMDAHVHRIG RTGRAGDKDG TAYTLITHKE ARFAGELVGS LIAAGQNVPM
601: ELMDLAMKDG RFRSKRDARK GGGKKSKGKG GNGRGVRGVD FGLGIGYNPE SNNPSSQTVP SRAAAVNSLR TGMMAQFKSN FVAATSGSQN QGSNNSPSTY
701: ANKRPVLQGF VSGGSIGGDM NRAQTTSSFS PAPTSAGKTS GQNSGENASH RNSENSRDRS RERRRPSGWD R

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.