Factsheet for Bra000447.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX83333	Canola	nucleus	94.65	100.0
Bra004464.1-P	Field mustard	cytosol	89.45	82.24
AT2G47330.1	Thale cress	cytosol	85.14	75.39
KRG96540	Soybean	cytosol, mitochondrion	78.75	69.01
KRH68277	Soybean	nucleus	78.6	67.65
PGSC0003DMT400023277	Potato	cytosol	75.33	65.5
Solyc01g079330.2.1	Tomato	nucleus	74.74	64.99
VIT_07s0005g01600.t01	Wine grape	cytosol	73.55	64.2
TraesCS4A01G121700.1	Wheat	mitochondrion	71.03	62.32
GSMUA_Achr1P24870_001	Banana	cytosol	61.37	62.29
TraesCS4B01G181800.1	Wheat	nucleus	70.73	62.14
EER94974	Sorghum	cytosol, mitochondrion, nucleus, plastid	70.58	62.01
Zm00001d047633_P002	Maize	nucleus	70.43	61.72
GSMUA_Achr1P13000_001	Banana	cytosol	63.15	61.24
Os03t0308500-01	Rice	mitochondrion	69.99	61.17
Zm00001d028898_P011	Maize	cytosol	69.69	60.91
TraesCS4D01G184200.1	Wheat	mitochondrion	71.17	60.71
HORVU4Hr1G053550.2	Barley	mitochondrion	70.58	59.82
Bra030884.1-P	Field mustard	nucleus	30.46	41.08
Bra035857.1-P	Field mustard	cytosol	32.1	36.55
Bra018133.1-P	Field mustard	cytosol	29.12	33.33
Bra003341.1-P	Field mustard	cytosol	30.16	33.28
Bra008471.1-P	Field mustard	cytosol	27.79	33.21
Bra035177.1-P	Field mustard	cytosol	28.83	32.99
Bra016869.1-P	Field mustard	cytosol, plastid	29.72	32.84
Bra035518.1-P	Field mustard	nucleus	26.15	32.84
Bra003568.1-P	Field mustard	cytosol	28.23	32.15
Bra023227.1-P	Field mustard	nucleus	25.71	31.86
Bra007399.1-P	Field mustard	cytosol	28.83	31.75
Bra003343.1-P	Field mustard	cytosol	28.97	30.33
Bra007402.1-P	Field mustard	cytosol	28.83	30.22
Bra040699.1-P	Field mustard	cytosol	25.56	28.24
Bra001004.1-P	Field mustard	cytosol	26.3	27.83
Bra021872.1-P	Field mustard	nucleus	27.19	27.77
Bra014568.1-P	Field mustard	cytosol	26.89	27.18
Bra029779.1-P	Field mustard	nucleus	35.81	27.17
Bra023478.1-P	Field mustard	cytosol	27.04	26.92
Bra025856.1-P	Field mustard	nucleus	36.85	21.18
Bra001200.1-P	Field mustard	cytosol	26.89	17.21

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EnsemblPlantsGene:Bra000447	EnsemblPlants:Bra000447.1	EnsemblPlants:Bra000447.1-P	InterPro:DEAD/DEAH_box_helicase_dom
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386	GO:GO:0005488
GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4C8B9	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF531	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI000253FF2E	SEG:seg

Description

AT2G47330 (E=1e-281) | DEAD/DEAH box helicase, putative

Coordinates

chrA03:-:11170931..11173383

Molecular Weight (calculated)

70046.4 Da

IEP (calculated)

4.925

GRAVY (calculated)

-0.371

Length

673 amino acids

Sequence
(BLAST)

001: MSIRNSTRFR GGDNSEDADV DNIDFTENEE DEEDDVDNGA SASANDEIDP LDAFMEGIHE EMKAAPPPKP KEKVERYKDD EDDDHVVSFL KAKKDLGLTL
101: AADALNAGYN SDEEVYAAAK AVDAGMLEYD SDDNPIVVDK RKIEPIQALD HSSIDYEPIN KDFYEEVESI SRMSEQEALD YRKSLGIRVS GFDVPKAVKT
201: FEDCVFSTQI MSAIKKQAYE KPTTIQCQAL AVVLSGRDVI GIAKTGSGKT AAFVLPMIVH IMDQPELQRE EGPIGVICAP TRELAHQIFL EAKKFSKAYG
301: LRVSAVYGGM GKHEQLKELK AGCEIVVATP GRLIDMLKMK ALTMMRASYL VLDEADRMFD LGFEPQVRSI VGQIRPDRQT LLFSATMPWK VEKLAREILS
401: DPIRVTVGEA GMANEDITQV VNVIPSDADK LPWLLEKLPG MIDEGDVLVF ASKKATVDEI EAQLTLNGFK VAALHGDKDQ ASRMETLQKF KSGIYHVLVA
501: TDVAARGLDI KSLKTVVNYD TAKDMDMHVH RIGRTGRAGD KDGVAYTLVT QREARFAGEL INSLVAAGQN VPQELMDLAM KDGRFKSKRD GRKGGGKKGG
601: GRGGGNRGVR GVDFGLGIGF NSESSGTSSQ AAPSRKGXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX LRH

Best Arabidopsis Sequence Match ( AT2G47330.1 )
(BLAST)

001: MSNRKFGMEG FGINRQTSYS FERSQAPQRL YVPPSSRGGD NSEDADLDNI DYMENEEAEE DIEEGGSAAA SGGEVDEIDP LDAFMEGIHQ EMKSAPPPKP
101: KEKLERYKDD DDDPVESYLK AKKDLGLTLA ADALNAGYNS DEEVYAAAKA VDAGMLDYDS DDNPIVVDKR KIEPITALDH SSIDYEPINK DFYEELESIS
201: GMTEQETTDY RQRLGIRVSG FDVHRPVKTF EDCGFSSQIM SAIKKQAYEK PTAIQCQALP IVLSGRDVIG IAKTGSGKTA AFVLPMIVHI MDQPELQRDE
301: GPIGVICAPT RELAHQIFLE AKKFSKAYGL RVSAVYGGMS KHEQFKELKA GCEIVVATPG RLIDMLKMKA LTMMRASYLV LDEADRMFDL GFEPQVRSIV
401: GQIRPDRQTL LFSATMPWKV EKLAREILSD PIRVTVGEVG MANEDITQVV NVIPSDAEKL PWLLEKLPGM IDEGDVLVFA SKKATVDEIE AQLTLNSFKV
501: AALHGDKDQA SRMETLQKFK SGVHHVLIAT DVAARGLDIK SLKTVVNYDI AKDMDMHVHR IGRTGRAGDR DGVAYTLVTQ REARFAGELV NSLVAAGQNV
601: PPELTDLAMK DGRFKSKRDG RKGGKKGRGG GGGNKGVRGV DFGLGIGFSS ESSRTPSSKA APSRSGAINS VRTGVMAQFK NSFVAATPSN PQNQAYPNKR
701: PSLMGFVSGG TIGGDMGRTQ SQAPPVAPTQ NASSHNSSQN HSQSSENRPR ERKRRSGWDN

Arabidopsis Description

RH24DEAD-box ATP-dependent RNA helicase 24 [Source:UniProtKB/Swiss-Prot;Acc:O22907]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.