Factsheet for Bra021872.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY53786	Canola	nucleus	86.95	97.12
CDY37696	Canola	nucleus	83.16	92.88
AT2G33730.1	Thale cress	nucleus	95.14	85.54
KRH51212	Soybean	nucleus	81.34	76.46
KRH01937	Soybean	nucleus	81.49	76.06
VIT_03s0038g00010.t01	Wine grape	cytosol	80.12	74.16
VIT_09s0054g01810.t01	Wine grape	cytosol	79.21	73.62
PGSC0003DMT400043101	Potato	nucleus	78.91	73.55
GSMUA_Achr3P01410_001	Banana	nucleus	58.27	72.87
Solyc02g081290.2.1	Tomato	nucleus	71.32	71.98
PGSC0003DMT400024330	Potato	cytosol	70.11	69.06
Zm00001d033704_P007	Maize	extracellular	77.24	68.97
TraesCS4A01G270200.1	Wheat	nucleus	76.02	68.91
Zm00001d013453_P001	Maize	nucleus	76.63	68.8
TraesCS4B01G043900.1	Wheat	nucleus	76.02	68.72
Solyc02g068190.1.1	Tomato	cytosol, nucleus	68.89	68.58
Os03t0708600-02	Rice	nucleus	76.02	68.07
TraesCS1B01G445500.1	Wheat	cytosol	47.04	67.83
HORVU3Hr1G031710.1	Barley	mitochondrion	25.95	65.52
HORVU4Hr1G007110.17	Barley	mitochondrion	76.02	65.06
HORVU1Hr1G083090.1	Barley	cytosol	24.58	64.54
TraesCS6B01G364400.1	Wheat	nucleus, plastid	62.67	63.64
TraesCS6B01G364300.1	Wheat	nucleus, plastid	62.37	63.33
KXG37746	Sorghum	nucleus	77.54	63.24
TraesCS4D01G041400.1	Wheat	nucleus	76.02	62.55
TraesCS5B01G079300.1	Wheat	nucleus	67.98	62.31
HORVU6Hr1G080730.2	Barley	cytosol	30.2	60.86
TraesCS1A01G415500.1	Wheat	cytosol	59.03	60.4
HORVU1Hr1G091050.3	Barley	nucleus	54.63	60.2
OQU83862	Sorghum	nucleus	56.6	58.1
HORVU5Hr1G044620.1	Barley	cytosol, mitochondrion	28.98	50.26
Bra030884.1-P	Field mustard	nucleus	26.71	35.27
Bra007399.1-P	Field mustard	cytosol	28.38	30.61
Bra016869.1-P	Field mustard	cytosol, plastid	28.07	30.38
Bra018133.1-P	Field mustard	cytosol	27.01	30.27
Bra023227.1-P	Field mustard	nucleus	24.89	30.2
Bra003341.1-P	Field mustard	cytosol	27.92	30.16
Bra035177.1-P	Field mustard	cytosol	26.71	29.93
Bra008471.1-P	Field mustard	cytosol	25.49	29.84
Bra035857.1-P	Field mustard	cytosol	26.71	29.78
Bra035518.1-P	Field mustard	nucleus	23.98	29.48
Bra007402.1-P	Field mustard	cytosol	28.68	29.44
Bra003343.1-P	Field mustard	cytosol	28.53	29.24
Bra003568.1-P	Field mustard	cytosol	25.64	28.6
Bra040699.1-P	Field mustard	cytosol	25.8	27.91
Bra001004.1-P	Field mustard	cytosol	26.56	27.52
Bra000447.1-P	Field mustard	cytosol	27.77	27.19
Bra004464.1-P	Field mustard	cytosol	28.22	25.41
Bra023478.1-P	Field mustard	cytosol	25.49	24.85
Bra014568.1-P	Field mustard	cytosol	23.37	23.12
Bra029779.1-P	Field mustard	nucleus	27.77	20.63
Bra025856.1-P	Field mustard	nucleus	32.47	18.27
Bra001200.1-P	Field mustard	cytosol	26.1	16.35

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra021872	EnsemblPlants:Bra021872.1	EnsemblPlants:Bra021872.1-P	ncoils:Coil
InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005737	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	UniProt:M4DZC5	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039
PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF25	InterPro:RNA-helicase_DEAD-box_CS
InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI00025436E7	SEG:seg

Description

AT2G33730 (E=8e-275) | DEAD box RNA helicase, putative

Coordinates

chrA04:-:14965434..14967821

Molecular Weight (calculated)

76141.5 Da

IEP (calculated)

8.695

GRAVY (calculated)

-0.920

Length

659 amino acids

Sequence
(BLAST)

001: MKRSINDVVG STSDAKKPVF LTKAQREELA LKRRQDQISD QRLRREQLTL PNPDDEDDRD RDRDRDRERE RDRGRDRDRD RDRDRERDRD RRERDREPDR
101: RIREREREEE AKAREAARVE KLVEREREKE LDAIKEQYLG GKKPKKRGPR REQKKQAAKH ERETRDEIRK KDGVIEKPEE AAAQKVREEA ADAYDSFDMR
201: VDRHWSDKRL EEMSERDWRI FREDFNISYK GSKIPRPMRS WEESKLTSEL LKAVERAGYK KPSPIQMAAI PLGLQQRDVI GIAETGSGKT AAFVLPMLAY
301: ISRLPPMSEE NETEGPYAVV MAPTRELAQQ IEEETVKFAH YLGFRVTSIV GGQSIEEQGL KITQGCEIVI ATPGRLIDCL ERRYAVLNQC NYVVLDEADR
401: MIDMGFEPQV AGVLDAMPSS NLKPENEEEE LDEKKIYRTT YMFSATMPPG VERLARKYLR NPVVVTIGTA GKATELISQH VIMMKESEKF FRLQKLLDEL
501: SDKTAIVFVN TKKNCDSIAK NLDKAGYRVT TLHGGKSQEQ REISLEGFRA KRYNVLVATD VVGRGIDIPD VAHVINYDMP KHIEMYTHRI GRTGRAGKSG
601: VATSFLTLHD TDVFYDLKQM LVQSNSAVPP ELARHEASRF KPGTVPDRPP RHSDTVYIN

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.