Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g081290.2.1 | Tomato | nucleus | 91.37 | 98.93 |
| VIT_03s0038g00010.t01 | Wine grape | cytosol | 84.72 | 84.13 |
| VIT_09s0054g01810.t01 | Wine grape | cytosol | 84.16 | 83.92 |
| KRH51212 | Soybean | nucleus | 83.03 | 83.74 |
| KRH01937 | Soybean | nucleus | 83.31 | 83.43 |
| GSMUA_Achr3P01410_001 | Banana | nucleus | 61.95 | 83.11 |
| PGSC0003DMT400024330 | Potato | cytosol | 78.64 | 83.11 |
| CDX84672 | Canola | cytosol | 50.92 | 80.54 |
| CDY53786 | Canola | nucleus | 66.2 | 79.32 |
| Bra021872.1-P | Field mustard | nucleus | 73.55 | 78.91 |
| AT2G33730.1 | Thale cress | nucleus | 80.2 | 77.35 |
| TraesCS4A01G270200.1 | Wheat | nucleus | 78.08 | 75.93 |
| Zm00001d033704_P007 | Maize | extracellular | 79.21 | 75.88 |
| TraesCS4B01G043900.1 | Wheat | nucleus | 78.08 | 75.72 |
| Zm00001d013453_P001 | Maize | nucleus | 78.5 | 75.61 |
| CDY37696 | Canola | nucleus | 63.08 | 75.59 |
| CDX79541 | Canola | nucleus | 66.76 | 75.04 |
| HORVU6Hr1G080730.2 | Barley | cytosol | 34.09 | 73.7 |
| Os03t0708600-02 | Rice | nucleus | 76.52 | 73.51 |
| HORVU4Hr1G007110.17 | Barley | mitochondrion | 78.08 | 71.69 |
| TraesCS6B01G364400.1 | Wheat | nucleus, plastid | 64.36 | 70.11 |
| TraesCS6B01G364300.1 | Wheat | nucleus, plastid | 64.36 | 70.11 |
| KXG37746 | Sorghum | nucleus | 79.35 | 69.43 |
| TraesCS1B01G445500.1 | Wheat | cytosol | 44.7 | 69.15 |
| TraesCS4D01G041400.1 | Wheat | nucleus | 78.22 | 69.04 |
| HORVU3Hr1G031710.1 | Barley | mitochondrion | 25.18 | 68.2 |
| TraesCS5B01G079300.1 | Wheat | nucleus | 68.6 | 67.45 |
| HORVU1Hr1G083090.1 | Barley | cytosol | 23.76 | 66.93 |
| TraesCS1A01G415500.1 | Wheat | cytosol | 59.55 | 65.37 |
| HORVU1Hr1G091050.3 | Barley | nucleus | 54.6 | 64.55 |
| OQU83862 | Sorghum | nucleus | 58.13 | 64.02 |
| HORVU5Hr1G044620.1 | Barley | cytosol, mitochondrion | 29.28 | 54.47 |
| PGSC0003DMT400083878 | Potato | cytosol | 25.32 | 35.73 |
| PGSC0003DMT400010921 | Potato | cytosol | 27.16 | 31.89 |
| PGSC0003DMT400081851 | Potato | cytosol | 26.59 | 31.13 |
| PGSC0003DMT400002828 | Potato | cytosol | 27.16 | 31.07 |
| PGSC0003DMT400024026 | Potato | nucleus | 23.62 | 29.98 |
| PGSC0003DMT400036663 | Potato | cytosol | 24.75 | 29.71 |
| PGSC0003DMT400073340 | Potato | cytosol | 24.47 | 29.37 |
| PGSC0003DMT400080614 | Potato | nucleus | 24.19 | 27.9 |
| PGSC0003DMT400046821 | Potato | cytosol | 25.46 | 25.07 |
| PGSC0003DMT400001391 | Potato | cytosol | 25.74 | 24.93 |
| PGSC0003DMT400023277 | Potato | cytosol | 27.02 | 24.68 |
| PGSC0003DMT400071932 | Potato | cytosol | 3.11 | 19.82 |
| PGSC0003DMT400011665 | Potato | nucleus | 28.15 | 17.85 |
Protein Annotations
| EntrezGene:102588025 | MapMan:16.4.7.1.3 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 |
| GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
| UniProt:M1BE32 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | EnsemblPlantsGene:PGSC0003DMG400016720 | PGSC:PGSC0003DMG400016720 |
| EnsemblPlants:PGSC0003DMT400043101 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 |
| PANTHER:PTHR24031:SF23 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 |
| UniParc:UPI0002967691 | RefSeq:XP_006348179.1 | SEG:seg | : | : | : |
Description
Dead box ATP-dependent RNA helicase [Source:PGSC_GENE;Acc:PGSC0003DMG400016720]
Coordinates
chr2:+:36934382..36937298
Molecular Weight (calculated)
81991.3 Da
IEP (calculated)
8.858
GRAVY (calculated)
-0.931
Length
707 amino acids
Sequence
(BLAST)
(BLAST)
001: MSRSVDELGT TKPDPTKKPV FLTKAQREQL ALQRRHDEIA EQKRRAEQLL QQQGNNRPSS TDNDHERDHR DRDSRGDHHR SRDRDRDRDR ERERESRDRE
101: VERRKRDRER DEEVKERERA RLDKLAERER EKELDAIKEQ YLGSKKPKKR VIKPSEKFRF SFDWENTEDT SRDMNALYQN PHEARLLFGR GFRAGMDRRE
201: QKKLAAKNER ELREEIWKKD GVEESAVEAA ALKKKEQDAD MYDTFDMRVD RHWSDKKLEE MTERDWRIFR EDHNISYKGS RIPRPMRNWV ESKLTTELLK
301: AVDRAGYKKP SPIQMAAIPL GLQQRDVIGV AETGSGKTAA FVLPMLTYIT RLPPLSEENE AEGPYAVVMA PTRELAQQIE DETVKFAHYL GIKVVSIVGG
401: QSIEEQGFRI RQGCEVVIAT PGRLLDCLER RYCVLNQCNY VVLDEADRMI DMGFEPQVVG VLDAMPSSNM KPENEDEELD EKRIYRTTYM FSATMPPAVE
501: RLARKYLRNP VVVTIGTAGK TTDLITQHVF MVKESEKMYK LQKLLDELGD KTAIVFINTK KQADFVAKNL DKNGYRVTTL HGGKSQEQRE ISLEGFRTKR
601: YNVLVATDVA GRGIDIPDVA HVINYDMPNN IEAYTHRIGR TGRAGKTGVA TTFLTMHDTE VFYDLKQMLT QSNSPVPPEL ARHEASKFKP GSIPDRPPRR
701: NDTVFVH
101: VERRKRDRER DEEVKERERA RLDKLAERER EKELDAIKEQ YLGSKKPKKR VIKPSEKFRF SFDWENTEDT SRDMNALYQN PHEARLLFGR GFRAGMDRRE
201: QKKLAAKNER ELREEIWKKD GVEESAVEAA ALKKKEQDAD MYDTFDMRVD RHWSDKKLEE MTERDWRIFR EDHNISYKGS RIPRPMRNWV ESKLTTELLK
301: AVDRAGYKKP SPIQMAAIPL GLQQRDVIGV AETGSGKTAA FVLPMLTYIT RLPPLSEENE AEGPYAVVMA PTRELAQQIE DETVKFAHYL GIKVVSIVGG
401: QSIEEQGFRI RQGCEVVIAT PGRLLDCLER RYCVLNQCNY VVLDEADRMI DMGFEPQVVG VLDAMPSSNM KPENEDEELD EKRIYRTTYM FSATMPPAVE
501: RLARKYLRNP VVVTIGTAGK TTDLITQHVF MVKESEKMYK LQKLLDELGD KTAIVFINTK KQADFVAKNL DKNGYRVTTL HGGKSQEQRE ISLEGFRTKR
601: YNVLVATDVA GRGIDIPDVA HVINYDMPNN IEAYTHRIGR TGRAGKTGVA TTFLTMHDTE VFYDLKQMLT QSNSPVPPEL ARHEASKFKP GSIPDRPPRR
701: NDTVFVH
001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
Arabidopsis Description
RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.