Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
Predictors | GFP | MS/MS | Papers | ||||||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
locus | Identity | Homology Identity |
---|
Ortholog
locus | Homology Species | Location | Identity | Homology Identity |
---|---|---|---|---|
CDY53786 | Canola | nucleus | 87.47 | 66.27 |
CDY37696 | Canola | nucleus | 87.25 | 66.1 |
CDX79541 | Canola | nucleus | 92.39 | 65.66 |
HORVU3Hr1G031710.1 | Barley | mitochondrion | 37.58 | 64.37 |
TraesCS1B01G445500.1 | Wheat | cytosol | 64.43 | 63.02 |
HORVU1Hr1G083090.1 | Barley | cytosol | 34.9 | 62.15 |
AT2G33730.1 | Thale cress | nucleus | 89.49 | 54.57 |
KRH51212 | Soybean | nucleus | 83.45 | 53.21 |
VIT_03s0038g00010.t01 | Wine grape | cytosol | 83.67 | 52.53 |
KRH01937 | Soybean | nucleus | 82.77 | 52.41 |
VIT_09s0054g01810.t01 | Wine grape | cytosol | 82.77 | 52.19 |
Solyc02g068190.1.1 | Tomato | cytosol, nucleus | 77.18 | 52.11 |
PGSC0003DMT400024330 | Potato | cytosol | 77.18 | 51.57 |
PGSC0003DMT400043101 | Potato | nucleus | 80.54 | 50.92 |
TraesCS6B01G364400.1 | Wheat | nucleus, plastid | 73.15 | 50.39 |
TraesCS6B01G364300.1 | Wheat | nucleus, plastid | 72.71 | 50.08 |
GSMUA_Achr3P01410_001 | Banana | nucleus | 58.84 | 49.91 |
Solyc02g081290.2.1 | Tomato | nucleus | 70.25 | 48.09 |
TraesCS4A01G270200.1 | Wheat | nucleus | 78.08 | 48.01 |
TraesCS4B01G043900.1 | Wheat | nucleus | 78.08 | 47.87 |
Zm00001d013453_P001 | Maize | nucleus | 78.52 | 47.82 |
HORVU1Hr1G091050.3 | Barley | nucleus | 63.53 | 47.49 |
Zm00001d033704_P007 | Maize | extracellular | 78.3 | 47.43 |
Os03t0708600-02 | Rice | nucleus | 78.08 | 47.42 |
HORVU6Hr1G080730.2 | Barley | cytosol | 34.23 | 46.79 |
TraesCS1A01G415500.1 | Wheat | cytosol | 67.11 | 46.58 |
TraesCS5B01G079300.1 | Wheat | nucleus | 73.6 | 45.76 |
HORVU4Hr1G007110.17 | Barley | mitochondrion | 78.08 | 45.32 |
OQU83862 | Sorghum | nucleus | 64.88 | 45.17 |
TraesCS4D01G041400.1 | Wheat | nucleus | 78.08 | 43.57 |
KXG37746 | Sorghum | nucleus | 78.52 | 43.44 |
HORVU5Hr1G044620.1 | Barley | cytosol, mitochondrion | 34.68 | 40.79 |
CDY47978 | Canola | plastid | 34.0 | 36.36 |
CDX98304 | Canola | cytosol, plastid | 34.45 | 33.41 |
CDY10596 | Canola | nucleus | 36.47 | 32.67 |
CDY02459 | Canola | cytosol | 36.47 | 32.67 |
CDX87315 | Canola | cytosol | 35.12 | 30.31 |
CDY06034 | Canola | cytosol | 38.93 | 30.26 |
CDY61276 | Canola | cytosol | 35.12 | 30.25 |
CDY39973 | Canola | cytosol | 34.68 | 29.92 |
CDY38671 | Canola | cytosol | 34.45 | 29.67 |
CDX71948 | Canola | cytosol | 39.15 | 29.31 |
CDX67949 | Canola | cytosol | 34.45 | 28.31 |
CDX67749 | Canola | cytosol | 38.03 | 28.24 |
CDX98301 | Canola | cytosol | 37.81 | 28.12 |
CDY14843 | Canola | cytosol, plastid | 38.26 | 27.94 |
CDY49232 | Canola | cytosol | 38.7 | 27.68 |
CDY16735 | Canola | cytosol | 36.47 | 27.58 |
CDY65864 | Canola | nucleus | 32.89 | 27.53 |
CDY48128 | Canola | cytosol | 36.47 | 27.44 |
CDY66221 | Canola | nucleus | 32.89 | 27.43 |
CDX67752 | Canola | cytosol | 38.7 | 27.33 |
CDX71944 | Canola | cytosol | 38.7 | 27.29 |
CDY41747 | Canola | nucleus | 32.66 | 27.04 |
CDX83333 | Canola | nucleus | 38.48 | 27.0 |
CDY72529 | Canola | cytosol | 34.45 | 24.72 |
CDX91943 | Canola | cytosol | 36.24 | 24.36 |
CDY28671 | Canola | cytosol | 35.79 | 24.13 |
CDX80096 | Canola | cytosol | 38.93 | 23.9 |
CDY37796 | Canola | cytosol | 39.15 | 23.84 |
CDX95719 | Canola | cytosol | 39.15 | 23.81 |
CDX74304 | Canola | cytosol | 36.02 | 23.4 |
CDX91036 | Canola | cytosol | 35.57 | 23.25 |
CDX84112 | Canola | nucleus | 15.44 | 23.0 |
CDX88990 | Canola | cytosol, plastid | 27.07 | 21.68 |
CDX85591 | Canola | cytosol | 35.57 | 21.14 |
CDX79384 | Canola | cytosol | 18.12 | 20.77 |
CDY44720 | Canola | nucleus | 37.36 | 19.33 |
CDX74101 | Canola | cytosol | 35.35 | 18.04 |
CDY08048 | Canola | nucleus | 35.12 | 17.84 |
CDY41597 | Canola | nucleus | 29.98 | 17.34 |
CDY00570 | Canola | nucleus | 19.02 | 14.0 |
CDY31513 | Canola | nucleus | 34.45 | 13.92 |
CDX91039 | Canola | cytosol | 2.46 | 6.29 |
CDX91037 | Canola | cytosol | 2.46 | 6.29 |
Protein Annotations
MapMan:16.4.7.1.3 | Gene3D:3.40.50.300 | GO:A0A078D681 | EnsemblPlants:CDX84672 | ProteinID:CDX84672 | ProteinID:CDX84672.1 |
InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 |
EnsemblPlantsGene:GSBRNA2T00141950001 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 |
InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 |
PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI0004EEC7A1 | SEG:seg | : | : |
Description
BnaA03g15580D
Coordinates
chrLK031838:+:677191..678534
Molecular Weight (calculated)
50031.6 Da
IEP (calculated)
8.337
GRAVY (calculated)
-0.282
Length
447 amino acids
Sequence
(BLAST)
(BLAST)
001: MSERDWRIFK EDFNISYKGS KIPPPMRSWE ESKLSSELLK AVERAGYNAP RPIQMAAIPL GLQQRDVIGV AETGSGKTHA FVLPMLAYIA RLPPMSEENI
101: REGPYAVVLA PTHELAQQIE KETVKFARCL GLRVVLTVGG QSIEEQGLKL AQGCEIVIAT PGRLIDCLER RLVVLNQCNY VVLDEADRMI DMGFEPQVAC
201: VLDAMPSSNL KPEKEEEELD EKKIYRTTYM FSATMASGVE RLARKYLRNP VVVTIGTAGK ATDLISQHVI MMKESEKFFR LQKLLDELGD KTAFVFVNTR
301: IKCHSIAKSL DKAGYRVTTS HGGKSQEQRE ISLEGFRAKR YNVLVATDVV GRGIDIQDVA HVINYDMPKP IEMYTHRIGR TGRAGKSGVA TTFLTLNDTD
401: VFYDLKQILV QSNSAVPLEL ARHEASRFKP GTVPDRPPRH SDTGYIN
101: REGPYAVVLA PTHELAQQIE KETVKFARCL GLRVVLTVGG QSIEEQGLKL AQGCEIVIAT PGRLIDCLER RLVVLNQCNY VVLDEADRMI DMGFEPQVAC
201: VLDAMPSSNL KPEKEEEELD EKKIYRTTYM FSATMASGVE RLARKYLRNP VVVTIGTAGK ATDLISQHVI MMKESEKFFR LQKLLDELGD KTAFVFVNTR
301: IKCHSIAKSL DKAGYRVTTS HGGKSQEQRE ISLEGFRAKR YNVLVATDVV GRGIDIQDVA HVINYDMPKP IEMYTHRIGR TGRAGKSGVA TTFLTLNDTD
401: VFYDLKQILV QSNSAVPLEL ARHEASRFKP GTVPDRPPRH SDTGYIN
001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
Arabidopsis Description
RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.