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Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: cytosol

Predictor Summary:
  • nucleus 1
  • cytosol 3
  • mitochondrion 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDY53786 Canola nucleus 87.47 66.27
CDY37696 Canola nucleus 87.25 66.1
CDX79541 Canola nucleus 92.39 65.66
HORVU3Hr1G031710.1 Barley mitochondrion 37.58 64.37
TraesCS1B01G445500.1 Wheat cytosol 64.43 63.02
HORVU1Hr1G083090.1 Barley cytosol 34.9 62.15
AT2G33730.1 Thale cress nucleus 89.49 54.57
KRH51212 Soybean nucleus 83.45 53.21
VIT_03s0038g00010.t01 Wine grape cytosol 83.67 52.53
KRH01937 Soybean nucleus 82.77 52.41
VIT_09s0054g01810.t01 Wine grape cytosol 82.77 52.19
Solyc02g068190.1.1 Tomato cytosol, nucleus 77.18 52.11
PGSC0003DMT400024330 Potato cytosol 77.18 51.57
PGSC0003DMT400043101 Potato nucleus 80.54 50.92
TraesCS6B01G364400.1 Wheat nucleus, plastid 73.15 50.39
TraesCS6B01G364300.1 Wheat nucleus, plastid 72.71 50.08
GSMUA_Achr3P01410_001 Banana nucleus 58.84 49.91
Solyc02g081290.2.1 Tomato nucleus 70.25 48.09
TraesCS4A01G270200.1 Wheat nucleus 78.08 48.01
TraesCS4B01G043900.1 Wheat nucleus 78.08 47.87
Zm00001d013453_P001 Maize nucleus 78.52 47.82
HORVU1Hr1G091050.3 Barley nucleus 63.53 47.49
Zm00001d033704_P007 Maize extracellular 78.3 47.43
Os03t0708600-02 Rice nucleus 78.08 47.42
HORVU6Hr1G080730.2 Barley cytosol 34.23 46.79
TraesCS1A01G415500.1 Wheat cytosol 67.11 46.58
TraesCS5B01G079300.1 Wheat nucleus 73.6 45.76
HORVU4Hr1G007110.17 Barley mitochondrion 78.08 45.32
OQU83862 Sorghum nucleus 64.88 45.17
TraesCS4D01G041400.1 Wheat nucleus 78.08 43.57
KXG37746 Sorghum nucleus 78.52 43.44
HORVU5Hr1G044620.1 Barley cytosol, mitochondrion 34.68 40.79
CDY47978 Canola plastid 34.0 36.36
CDX98304 Canola cytosol, plastid 34.45 33.41
CDY10596 Canola nucleus 36.47 32.67
CDY02459 Canola cytosol 36.47 32.67
CDX87315 Canola cytosol 35.12 30.31
CDY06034 Canola cytosol 38.93 30.26
CDY61276 Canola cytosol 35.12 30.25
CDY39973 Canola cytosol 34.68 29.92
CDY38671 Canola cytosol 34.45 29.67
CDX71948 Canola cytosol 39.15 29.31
CDX67949 Canola cytosol 34.45 28.31
CDX67749 Canola cytosol 38.03 28.24
CDX98301 Canola cytosol 37.81 28.12
CDY14843 Canola cytosol, plastid 38.26 27.94
CDY49232 Canola cytosol 38.7 27.68
CDY16735 Canola cytosol 36.47 27.58
CDY65864 Canola nucleus 32.89 27.53
CDY48128 Canola cytosol 36.47 27.44
CDY66221 Canola nucleus 32.89 27.43
CDX67752 Canola cytosol 38.7 27.33
CDX71944 Canola cytosol 38.7 27.29
CDY41747 Canola nucleus 32.66 27.04
CDX83333 Canola nucleus 38.48 27.0
CDY72529 Canola cytosol 34.45 24.72
CDX91943 Canola cytosol 36.24 24.36
CDY28671 Canola cytosol 35.79 24.13
CDX80096 Canola cytosol 38.93 23.9
CDY37796 Canola cytosol 39.15 23.84
CDX95719 Canola cytosol 39.15 23.81
CDX74304 Canola cytosol 36.02 23.4
CDX91036 Canola cytosol 35.57 23.25
CDX84112 Canola nucleus 15.44 23.0
CDX88990 Canola cytosol, plastid 27.07 21.68
CDX85591 Canola cytosol 35.57 21.14
CDX79384 Canola cytosol 18.12 20.77
CDY44720 Canola nucleus 37.36 19.33
CDX74101 Canola cytosol 35.35 18.04
CDY08048 Canola nucleus 35.12 17.84
CDY41597 Canola nucleus 29.98 17.34
CDY00570 Canola nucleus 19.02 14.0
CDY31513 Canola nucleus 34.45 13.92
CDX91039 Canola cytosol 2.46 6.29
CDX91037 Canola cytosol 2.46 6.29
Protein Annotations
MapMan:16.4.7.1.3Gene3D:3.40.50.300GO:A0A078D681EnsemblPlants:CDX84672ProteinID:CDX84672ProteinID:CDX84672.1
InterPro:DEAD/DEAH_box_helicase_domGO:GO:0000166GO:GO:0003674GO:GO:0003676GO:GO:0005488GO:GO:0005524
EnsemblPlantsGene:GSBRNA2T00141950001InterPro:Helicase_ATP-bdInterPro:Helicase_CInterPro:IPR001650InterPro:IPR014001InterPro:IPR014014
InterPro:P-loop_NTPasePFAM:PF00270PFAM:PF00271ScanProsite:PS00039PFscan:PS51192PFscan:PS51194
PFscan:PS51195PANTHER:PTHR24031PANTHER:PTHR24031:SF25InterPro:RNA-helicase_DEAD-box_CSInterPro:RNA_helicase_DEAD_Q_motifSMART:SM00487
SMART:SM00490SUPFAM:SSF52540UniParc:UPI0004EEC7A1SEG:seg::
Description
BnaA03g15580D
Coordinates
chrLK031838:+:677191..678534
Molecular Weight (calculated)
50031.6 Da
IEP (calculated)
8.337
GRAVY (calculated)
-0.282
Length
447 amino acids
Sequence
(BLAST)
001: MSERDWRIFK EDFNISYKGS KIPPPMRSWE ESKLSSELLK AVERAGYNAP RPIQMAAIPL GLQQRDVIGV AETGSGKTHA FVLPMLAYIA RLPPMSEENI
101: REGPYAVVLA PTHELAQQIE KETVKFARCL GLRVVLTVGG QSIEEQGLKL AQGCEIVIAT PGRLIDCLER RLVVLNQCNY VVLDEADRMI DMGFEPQVAC
201: VLDAMPSSNL KPEKEEEELD EKKIYRTTYM FSATMASGVE RLARKYLRNP VVVTIGTAGK ATDLISQHVI MMKESEKFFR LQKLLDELGD KTAFVFVNTR
301: IKCHSIAKSL DKAGYRVTTS HGGKSQEQRE ISLEGFRAKR YNVLVATDVV GRGIDIQDVA HVINYDMPKP IEMYTHRIGR TGRAGKSGVA TTFLTLNDTD
401: VFYDLKQILV QSNSAVPLEL ARHEASRFKP GTVPDRPPRH SDTGYIN
Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)
001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
Arabidopsis Description
RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.