Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra035518.1-P | Field mustard | nucleus | 96.11 | 96.83 |
| CDX84112 | Canola | nucleus | 52.22 | 94.0 |
| CDY65864 | Canola | nucleus | 89.63 | 90.64 |
| CDY66221 | Canola | nucleus | 89.26 | 89.93 |
| AT1G31970.1 | Thale cress | cytosol | 86.48 | 86.96 |
| EER96257 | Sorghum | cytosol | 63.89 | 67.38 |
| Os07t0301200-01 | Rice | cytosol | 63.7 | 67.19 |
| Zm00001d019449_P004 | Maize | nucleus | 62.78 | 66.73 |
| KRH39630 | Soybean | nucleus | 65.37 | 65.74 |
| KRH74291 | Soybean | nucleus | 65.37 | 65.74 |
| HORVU5Hr1G037290.3 | Barley | nucleus | 63.15 | 64.34 |
| TraesCS5D01G125100.1 | Wheat | nucleus | 63.15 | 63.86 |
| TraesCS5B01G120500.1 | Wheat | nucleus | 62.78 | 63.84 |
| TraesCS5A01G114400.1 | Wheat | nucleus | 63.15 | 63.74 |
| Solyc08g076200.2.1 | Tomato | nucleus | 62.96 | 61.48 |
| PGSC0003DMT400024026 | Potato | nucleus | 63.15 | 61.22 |
| GSMUA_Achr11P... | Banana | nucleus | 63.33 | 59.27 |
| VIT_02s0109g00380.t01 | Wine grape | cytosol | 66.48 | 57.17 |
| CDY02459 | Canola | cytosol | 36.67 | 39.68 |
| CDY10596 | Canola | nucleus | 36.48 | 39.48 |
| CDY47978 | Canola | plastid | 28.52 | 36.84 |
| CDY16735 | Canola | cytosol | 36.85 | 33.67 |
| CDY48128 | Canola | cytosol | 36.67 | 33.33 |
| CDX98304 | Canola | cytosol, plastid | 28.33 | 33.19 |
| CDX84672 | Canola | cytosol | 27.04 | 32.66 |
| CDY06034 | Canola | cytosol | 32.96 | 30.96 |
| CDY14843 | Canola | cytosol, plastid | 33.89 | 29.9 |
| CDX67949 | Canola | cytosol | 30.0 | 29.78 |
| CDX67749 | Canola | cytosol | 33.15 | 29.73 |
| CDX71948 | Canola | cytosol | 32.78 | 29.65 |
| CDX98301 | Canola | cytosol | 32.96 | 29.62 |
| CDX87315 | Canola | cytosol | 28.33 | 29.54 |
| CDY38671 | Canola | cytosol | 28.33 | 29.48 |
| CDY61276 | Canola | cytosol | 28.33 | 29.48 |
| CDY39973 | Canola | cytosol | 28.15 | 29.34 |
| CDY49232 | Canola | cytosol | 33.15 | 28.64 |
| CDX71944 | Canola | cytosol | 33.33 | 28.39 |
| CDX83333 | Canola | nucleus | 33.15 | 28.1 |
| CDX67752 | Canola | cytosol | 32.78 | 27.96 |
| CDX91943 | Canola | cytosol | 34.07 | 27.67 |
| CDY28671 | Canola | cytosol | 33.89 | 27.6 |
| CDX91036 | Canola | cytosol | 34.26 | 27.05 |
| CDX74304 | Canola | cytosol | 34.07 | 26.74 |
| CDY53786 | Canola | nucleus | 28.89 | 26.44 |
| CDY37696 | Canola | nucleus | 28.15 | 25.76 |
| CDY72529 | Canola | cytosol | 28.7 | 24.88 |
| CDX85591 | Canola | cytosol | 34.44 | 24.73 |
| CDX80096 | Canola | cytosol | 33.15 | 24.59 |
| CDX95719 | Canola | cytosol | 33.33 | 24.49 |
| CDY37796 | Canola | cytosol | 33.15 | 24.39 |
| CDX79541 | Canola | nucleus | 27.59 | 23.69 |
| CDX88990 | Canola | cytosol, plastid | 24.44 | 23.66 |
| CDX79384 | Canola | cytosol | 15.37 | 21.28 |
| CDX74101 | Canola | cytosol | 34.44 | 21.23 |
| CDY08048 | Canola | nucleus | 34.44 | 21.14 |
| CDY44720 | Canola | nucleus | 30.74 | 19.21 |
| CDY41597 | Canola | nucleus | 25.93 | 18.11 |
| CDY31513 | Canola | nucleus | 30.19 | 14.74 |
| CDY00570 | Canola | nucleus | 16.48 | 14.66 |
| CDX91039 | Canola | cytosol | 2.22 | 6.86 |
| CDX91037 | Canola | cytosol | 2.22 | 6.86 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | GO:A0A078HV89 | UniProt:A0A078HV89 | EnsemblPlants:CDY41747 | ProteinID:CDY41747 |
| ProteinID:CDY41747.1 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 |
| GO:GO:0003824 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00073611001 |
| InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF215 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0004EE5FB2 | SEG:seg | : | : | : |
Description
BnaA08g07020DBnaA08g07020D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HV89]
Coordinates
chrLK032505:-:90496..93059
Molecular Weight (calculated)
59999.4 Da
IEP (calculated)
9.447
GRAVY (calculated)
-0.446
Length
540 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGKKQELPV SDKPLAAVES PMTETIKKKK KKSKHSEESQ EVEVPQEVTN GEELSNKEKK KEKRKREENE MENKKKKEAD KVPEDSGVSN GGESEQKVVV
101: TGKDVEEAKY AALTSFAESK LPENVLDCCK TFQKPSPIQS HSWPFLLDGR DLIGIAKTGS GKTLAFGIPA IMHMLKKNKK GKGTRNPTCL VLSPTRELAV
201: QISDVLSEAG EPCGLKSICV YGGSSKRPQI NAIRSGVDIV IGTPGRLRDL IDSNELRLSD VSFVVLDEAD RMLDMGFEEP VRFILSKTNK GNSFFFICLI
301: VRQMVMFSAT WPMEVHKLAQ EFMDPNPVKV VIGSVDLAAN HDVLQIIEVL DDRARDQRLV ALLEKYHKSQ KNRVLVFALY KVEADRLERF LQTRGWKAVS
401: IHGNKAQSER TRSLALFKEG SCPLLVATDV AARGLDIPDV EVVINYSFPL TTEDYVHRIG RTGRAGKKGV AHTFFTQQNK GLAGELVNVL REAKQVVPAD
501: LLKFGTHVKK KESKLYGPHF KDIAADAPKA KKITFADSDD
101: TGKDVEEAKY AALTSFAESK LPENVLDCCK TFQKPSPIQS HSWPFLLDGR DLIGIAKTGS GKTLAFGIPA IMHMLKKNKK GKGTRNPTCL VLSPTRELAV
201: QISDVLSEAG EPCGLKSICV YGGSSKRPQI NAIRSGVDIV IGTPGRLRDL IDSNELRLSD VSFVVLDEAD RMLDMGFEEP VRFILSKTNK GNSFFFICLI
301: VRQMVMFSAT WPMEVHKLAQ EFMDPNPVKV VIGSVDLAAN HDVLQIIEVL DDRARDQRLV ALLEKYHKSQ KNRVLVFALY KVEADRLERF LQTRGWKAVS
401: IHGNKAQSER TRSLALFKEG SCPLLVATDV AARGLDIPDV EVVINYSFPL TTEDYVHRIG RTGRAGKKGV AHTFFTQQNK GLAGELVNVL REAKQVVPAD
501: LLKFGTHVKK KESKLYGPHF KDIAADAPKA KKITFADSDD
001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
Arabidopsis Description
RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.