CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040699.1-P	Field mustard	cytosol	91.1	99.18
AT3G01540.2	Thale cress	cytosol	80.39	86.11
CDX91943	Canola	cytosol	85.37	85.11
CDX74304	Canola	cytosol	85.82	82.7
CDX91036	Canola	cytosol	71.49	69.3
CDX85591	Canola	cytosol	74.81	65.96
Solyc12g035130.1.1	Tomato	nucleus	59.73	64.71
PGSC0003DMT400080614	Potato	nucleus	59.73	64.6
CDX91039	Canola	cytosol	15.69	59.43
CDX91037	Canola	cytosol	15.69	59.43
Solyc02g086660.2.1	Tomato	nucleus	63.2	59.35
PGSC0003DMT400001391	Potato	cytosol	63.5	57.67
TraesCS3A01G130200.4	Wheat	cytosol	55.66	56.77
TraesCS3B01G149300.8	Wheat	cytosol	55.51	56.62
TraesCS3D01G131100.11	Wheat	cytosol	55.66	56.51
KRH56577	Soybean	nucleus	65.16	55.74
Zm00001d008725_P003	Maize	cytosol	57.92	55.41
KRG93254	Soybean	endoplasmic reticulum	64.56	55.15
Zm00001d039673_P002	Maize	cytosol	56.86	53.78
OQU86230	Sorghum	cytosol	57.16	53.01
HORVU3Hr1G024610.13	Barley	cytosol, plastid	55.96	52.48
VIT_14s0066g01020.t01	Wine grape	cytosol	64.86	49.83
Os01t0172200-01	Rice	cytosol	57.01	49.8
KXG32714	Sorghum	nucleus	58.22	48.8
Zm00001d011155_P012	Maize	nucleus	57.32	48.53
GSMUA_Achr8P31890_001	Banana	nucleus	57.01	48.09
Os01t0549400-01	Rice	nucleus	56.41	47.22
Zm00001d044510_P002	Maize	mitochondrion	56.86	47.01
CDY10596	Canola	nucleus	34.84	46.29
CDY02459	Canola	cytosol	34.69	46.09
TraesCS3D01G202500.3	Wheat	nucleus	55.66	45.61
TraesCS3A01G194200.1	Wheat	nucleus	53.39	45.21
TraesCS3B01G230800.1	Wheat	nucleus	52.94	44.71
CDY47978	Canola	plastid	25.49	40.43
CDY16735	Canola	cytosol	35.75	40.1
CDY48128	Canola	cytosol	35.9	40.07
CDX74101	Canola	cytosol	50.98	38.58
CDY08048	Canola	nucleus	50.83	38.3
CDX98304	Canola	cytosol, plastid	25.34	36.44
CDX84672	Canola	cytosol	24.13	35.79
CDY41747	Canola	nucleus	27.6	33.89
CDY66221	Canola	nucleus	27.3	33.77
CDY65864	Canola	nucleus	27.0	33.52
CDY06034	Canola	cytosol	28.81	33.22
CDX71948	Canola	cytosol	29.56	32.83
CDY14843	Canola	cytosol, plastid	30.17	32.68
CDX98301	Canola	cytosol	29.41	32.45
CDX67749	Canola	cytosol	29.26	32.23
CDY49232	Canola	cytosol	29.71	31.52
CDX67752	Canola	cytosol	30.02	31.44
CDX71944	Canola	cytosol	29.56	30.91
CDX87315	Canola	cytosol	23.83	30.5
CDY61276	Canola	cytosol	23.83	30.44
CDX84112	Canola	nucleus	13.73	30.33
CDY38671	Canola	cytosol	23.68	30.25
CDX67949	Canola	cytosol	24.74	30.15
CDY39973	Canola	cytosol	23.53	30.12
CDY53786	Canola	nucleus	24.89	27.97
CDY37696	Canola	nucleus	24.74	27.8
CDX83333	Canola	nucleus	25.94	27.0
CDY72529	Canola	cytosol	24.59	26.16
CDX88990	Canola	cytosol, plastid	21.57	25.63
CDX79541	Canola	nucleus	23.83	25.12
CDX80096	Canola	cytosol	27.45	25.0
CDY37796	Canola	cytosol	27.6	24.93
CDX95719	Canola	cytosol	27.45	24.76
CDX79384	Canola	cytosol	13.27	22.56
CDY44720	Canola	nucleus	26.7	20.49
CDY41597	Canola	nucleus	23.38	20.05
CDY00570	Canola	nucleus	16.59	18.12
CDY31513	Canola	nucleus	26.4	15.82

Protein Annotations

Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	GO:A0A078GT40	UniProt:A0A078GT40	EnsemblPlants:CDY28671
ProteinID:CDY28671	ProteinID:CDY28671.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003824	GO:GO:0004386	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0016787
EnsemblPlantsGene:GSBRNA2T00041297001	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001
InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFAM:PF00397	ScanProsite:PS00039	ScanProsite:PS01159
PFscan:PS50020	PFscan:PS51192	PFscan:PS51194	PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS
SMART:SM00456	SMART:SM00487	SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	UniParc:UPI0004EDFF8D
InterPro:WW_dom	InterPro:WW_dom_sf	SEG:seg	:	:	:

Description

BnaCnng05570DBnaCnng05570D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GT40]

Coordinates

chrLK032225:+:44797..48468

Molecular Weight (calculated)

72401.5 Da

IEP (calculated)

10.179

GRAVY (calculated)

-0.426

Length

663 amino acids

Sequence
(BLAST)

001: MAATASAVRY ASEDHSLPKP WKGLVDDLTG YLYFWNPETN VTQYERPATS SHPPKLLSVS SSVQVQVQVQ HHTSSIPSYV PAAKDDVLYR NGYGNGGPKV
101: ARSGAANGLG NSSPPPPSSS ALANDISPDA YCRRHEITVS GGQVPPPLMS FETTGFPPEL LREVRCFLLR GANVVHCTNF LRSLQNSWSG LYGGPICFLE
201: GLPKSCKLVT GPVNGVLSAG FSAPTPIQAQ SWPIAMQGRD IVAIAKTGSG KTLGYLIPAF MHLQRIRNDS RMGPTILVLS PTRELATQIQ DEAVKFGRSS
301: RISCTCLYGG APKGPQLRDL ERGADIVVAT PGRLNDILEM RRISLRQVSY LVLDEADRML DMGFEPQIRK IVKEIPTKRQ TLMYTATWPK GVRKIAADLL
401: VNPAQVNIGN VDELVANKSI TQHIEVVATM EKQRRLEQIL RSQEPGSKVI IFCSTKRMCD QLTRNITRQF GAAAIHGDKS QPERDSVLNQ FRSGRTPVLV
501: ATDVAARGLD VKDIRAVINY DFPNGVEDYV HRIGRTGRAG ATGQAFTFFG DQDSKHASDL IKILEGADQK VPPQIREMAA RGGGMNKFSR WGPPSGGRGR
601: DSGYGGRGSS FGSRDSGMGS RSSNGWGRER ERSRSPERFN RVPPPSSNGS PPRSFHEAML KHR

Best Arabidopsis Sequence Match ( AT3G01540.4 )
(BLAST)

001: MAATAAASVV RYAPEDHTLP KPWKGLIDDR TGYLYFWNPE TNVTQYEKPT PSLPPKFSPA VSVSSSVQVQ QTDAYAPPKD DDKYSRGSER VSRFSEGGRS
101: GPPYSNGAAN GVGDSAYGAA STRVPLPSSA PASELSPEAY SRRHEITVSG GQVPPPLMSF EATGFPPELL REVLSAGFSA PTPIQAQSWP IAMQGRDIVA
201: IAKTGSGKTL GYLIPGFLHL QRIRNDSRMG PTILVLSPTR ELATQIQEEA VKFGRSSRIS CTCLYGGAPK GPQLRDLERG ADIVVATPGR LNDILEMRRI
301: SLRQISYLVL DEADRMLDMG FEPQIRKIVK EIPTKRQTLM YTATWPKGVR KIAADLLVNP AQVNIGNVDE LVANKSITQH IEVVAPMEKQ RRLEQILRSQ
401: EPGSKVIIFC STKRMCDQLT RNLTRQFGAA AIHGDKSQPE RDNVLNQFRS GRTPVLVATD VAARGLDVKD IRAVVNYDFP NGVEDYVHRI GRTGRAGATG
501: QAFTFFGDQD SKHASDLIKI LEGANQRVPP QIREMATRGG GGMNKFSRWG PPSGGRGRGG DSGYGGRGSF ASRDSRSSNG WGRERERSRS PERFNRAPPP
601: SSTGSPPRSF HETMMMKHR

Arabidopsis Description

RH14DEAD-box ATP-dependent RNA helicase 14 [Source:UniProtKB/Swiss-Prot;Acc:Q8H136]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.