CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
vacuole 1
plastid 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH56577	Soybean	nucleus	94.33	94.45
AT3G01540.2	Thale cress	cytosol	56.31	70.6
PGSC0003DMT400080614	Potato	nucleus	55.41	70.15
Solyc12g035130.1.1	Tomato	nucleus	55.28	70.1
Bra001004.1-P	Field mustard	cytosol	57.35	69.97
Bra040699.1-P	Field mustard	cytosol	54.9	69.95
Bra023478.1-P	Field mustard	cytosol	60.82	69.82
CDX91036	Canola	cytosol	60.05	68.13
Solyc02g086660.2.1	Tomato	nucleus	59.54	65.44
AT5G14610.1	Thale cress	cytosol	59.92	65.31
CDY28671	Canola	cytosol	55.15	64.56
CDX91943	Canola	cytosol	55.28	64.51
PGSC0003DMT400001391	Potato	cytosol	60.05	63.84
CDX85591	Canola	cytosol	60.57	62.5
CDX74304	Canola	cytosol	55.15	62.21
TraesCS3A01G130200.4	Wheat	cytosol	50.77	60.62
TraesCS3B01G149300.8	Wheat	cytosol	50.64	60.46
TraesCS3D01G131100.11	Wheat	cytosol	50.64	60.18
VIT_14s0066g01020.t01	Wine grape	cytosol	66.37	59.68
Zm00001d008725_P003	Maize	cytosol	52.84	59.16
Zm00001d039673_P002	Maize	cytosol	51.93	57.49
GSMUA_Achr8P31890_001	Banana	nucleus	57.73	57.0
OQU86230	Sorghum	cytosol	52.32	56.78
HORVU3Hr1G024610.13	Barley	cytosol, plastid	50.64	55.59
KXG32714	Sorghum	nucleus	55.8	54.74
Os01t0172200-01	Rice	cytosol	53.48	54.68
Zm00001d011155_P012	Maize	nucleus	54.51	54.02
Os01t0549400-01	Rice	nucleus	54.38	53.28
Zm00001d044510_P002	Maize	mitochondrion	55.03	53.24
TraesCS3A01G194200.1	Wheat	nucleus	51.93	51.47
TraesCS3D01G202500.3	Wheat	nucleus	53.61	51.42
TraesCS3B01G230800.1	Wheat	nucleus	51.55	50.96
KRH47127	Soybean	nucleus	30.54	46.75
KRH44155	Soybean	cytosol	30.54	46.75
KRH48684	Soybean	cytosol, endoplasmic reticulum	26.8	43.7
KRH03228	Soybean	nucleus	32.86	42.36
KRH57127	Soybean	endoplasmic reticulum, nucleus	33.38	42.32
KRH36905	Soybean	nucleus	55.28	36.82
KRH11875	Soybean	endoplasmic reticulum	55.15	35.64
KRG97325	Soybean	endoplasmic reticulum	27.06	35.53
KRH58901	Soybean	nucleus	27.84	35.18
KRH42811	Soybean	endoplasmic reticulum	27.84	34.9
KRH74291	Soybean	nucleus	24.1	34.82
KRH71800	Soybean	plastid	27.32	34.7
KRH38030	Soybean	endoplasmic reticulum	27.19	34.53
KRH31589	Soybean	nucleus	26.8	34.44
KRH39630	Soybean	nucleus	23.71	34.26
KRH20283	Soybean	plastid	25.52	33.79
KRH03709	Soybean	plastid	26.29	33.44
KRH30661	Soybean	endoplasmic reticulum	21.26	29.2
KRG98124	Soybean	endoplasmic reticulum	21.39	29.07
KRH68534	Soybean	cytosol	21.39	28.28
KRG94409	Soybean	cytosol	21.26	28.06
KRH51212	Soybean	nucleus	24.36	26.96
KRH01937	Soybean	nucleus	24.23	26.63
KRG96540	Soybean	cytosol, mitochondrion	25.52	25.78
KRH68277	Soybean	nucleus	25.39	25.19
KRH77709	Soybean	nucleus	25.52	17.93
KRH27757	Soybean	nucleus	25.13	17.62

Protein Annotations

EntrezGene:100816455	Gene3D:2.20.70.10	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R4J5Z2	EMBL:ACUP02011545
InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_19G006000	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524	GO:GO:0016787	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001202	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRG93254
ProteinID:KRG93254	ProteinID:KRG93254.1	ProteinID:KRG93255.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	ScanProsite:PS01159	PFscan:PS50020	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF255	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00456	SMART:SM00487
SMART:SM00490	SUPFAM:SSF51045	SUPFAM:SSF52540	UniParc:UPI0001D62D64	InterPro:WW_dom	InterPro:WW_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr19:-:554726..558647

Molecular Weight (calculated)

83798.6 Da

IEP (calculated)

10.201

GRAVY (calculated)

-0.780

Length

776 amino acids

Sequence
(BLAST)

001: MAATATVSLM GPRYAPPDPT LPKPWRGLVD GKTGYLYFWN PETNVTQYER PSSSSASQSK FSSVPSSSVQ VQQSSQGSQR GRSPDFSDRY DRNGTGGSND
101: AGSRNNQSSK GGSYTSHDVS NGTNVAGNGN SSVRGHGASD AGAGLSAESY RHRHEISVTG DNVPPPLASF GSTGFPSELL REVQNAGFSA PTPIQAQSWP
201: IALQGRDIVA IAKTGSGKTL GYLIPAFIHL KRSGNNSKMG PTALVLSPTR ELATQIQDEA MKFGKSSRIS CACLYGGAPK GPQLRDIDRG ADIVVATPGR
301: LNDILEMRRI SLNQVSYLVL DEADRMLDMG FEPQIRKIVN EVPNRRQTLM FTATWPKEVR KIAADLLVKP VQVNIGNVDE LVANKSITQH VEVLPPMEKQ
401: RRLEHILRSQ DQGSKIIIFC STKKMCDQLA RNLTRHFGAA AIHGDKSQAE RDHVLSQFRT GRSPVLVATD VAARGLDIKD IRVVVNYDFP TGVEDYVHRI
501: GRTGRAGATG LAYTFFGDQD AKYASDLIKV LEGANQKVPP ELRDMSSRSG GGMGRSRRWG SGGRGGHGDS GYGGRNNDSG YGGRGNDAGY GGRGSDSNYG
601: GRGTAASGRG GGRGFDHDSQ RNDRGRSPDK GSSWSDRFKS VNRDRSRSPD RAALPQHSQG GSFHKAMMER GGGGGDRNKS FNRDRSRSPS PHRQEKCPAV
701: RDRSPVYSFH QSMMGRGQSS PSSQRQRARS PHRNSPPSQG DGRYAGSHSS YNGEVEEGMI PEEEGMIGQD DPVNVN

Best Arabidopsis Sequence Match ( AT5G14610.5 )
(BLAST)

001: MLFFQEFGMA ATASAIRYAP EDPNLPKPWK GLVDSRTGYL YFWNPETNVT QYERPASSAP PKLAAIPVSS SVQTNQQSSS GFNSGKEDDK YGRGSDGPKS
101: DSGSRFNEAG RTGPISSNDA ASGLGNASSG GSSARGPPSS AAGNELSPEA YCRKHEITVS GGQVPPPLMS FEATGLPNEL LREVYSAGFS APSPIQAQSW
201: PIAMQNRDIV AIAKTGSGKT LGYLIPGFMH LQRIHNDSRM GPTILVLSPT RELATQIQVE ALKFGKSSKI SCACLYGGAP KGPQLKEIER GVDIVVATPG
301: RLNDILEMKR ISLHQVSYLV LDEADRMLDM GFEPQIRKIV NEVPTKRQTL MYTATWPKEV RKIAADLLVN PAQVNIGNVD ELVANKSITQ TIEVLAPMEK
401: HSRLEQILRS QEPGSKIIIF CSTKRMCDQL ARNLTRTFGA AAIHGDKSQA ERDDVLNQFR SGRTPVLVAT DVAARGLDVK DIRVVVNYDF PNGVEDYVHR
501: IGRTGRAGAT GLAYTFFGDQ DAKHASDLIK ILEGANQKVP PQVREMATRG GGGMNKFRRW GTPSSGGGGG RGGYGDSGYG GRGESGYGSR GDSGYGGRGD
601: SGGRGSWAPS RDSGSSGWGR ERSRSPERFR GGPPSTSSPP RSFHEAMMMK NR

Arabidopsis Description

DEAD box RNA helicase family protein [Source:UniProtKB/TrEMBL;Acc:F4K6V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.