CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

plastid 4
nucleus 2
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
nucleus: 28499913

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH31589	Soybean	nucleus	95.26	93.21
KRH58901	Soybean	nucleus	87.99	84.69
KRH42811	Soybean	endoplasmic reticulum	87.82	83.84
VIT_06s0004g00850.t01	Wine grape	cytosol	52.62	81.41
Solyc01g005960.2.1	Tomato	plastid	79.19	77.48
PGSC0003DMT400081851	Potato	cytosol	78.51	76.82
PGSC0003DMT400010921	Potato	cytosol	78.17	76.74
KRH38030	Soybean	endoplasmic reticulum	77.33	74.8
KRH71800	Soybean	plastid	76.14	73.65
Os11t0599500-00	Rice	nucleus, plasma membrane	76.31	72.39
TraesCS4D01G148700.1	Wheat	golgi	73.6	72.38
TraesCS4B01G126000.1	Wheat	cytosol, plastid	73.6	72.38
HORVU4Hr1G031280.1	Barley	cytosol, plastid	73.27	72.05
Zm00001d048924_P001	Maize	plasma membrane	73.27	71.22
KXG28851	Sorghum	cytosol, plastid	73.6	69.6
TraesCS4A01G141400.1	Wheat	plastid	73.43	66.16
KRH20283	Soybean	plastid	57.87	58.36
KRH03709	Soybean	plastid	58.71	56.89
KRH44155	Soybean	cytosol	31.13	36.29
KRH47127	Soybean	nucleus	30.8	35.9
KRH30661	Soybean	endoplasmic reticulum	31.64	33.1
KRH48684	Soybean	cytosol, endoplasmic reticulum	26.57	32.98
KRH03228	Soybean	nucleus	33.5	32.89
KRG98124	Soybean	endoplasmic reticulum	31.64	32.75
KRH57127	Soybean	endoplasmic reticulum, nucleus	33.84	32.68
KRH39630	Soybean	nucleus	29.27	32.22
KRH74291	Soybean	nucleus	29.1	32.03
KRG94409	Soybean	cytosol	29.61	29.76
KRH68534	Soybean	cytosol	29.44	29.64
KRH56577	Soybean	nucleus	35.53	27.1
KRG93254	Soybean	endoplasmic reticulum	35.53	27.06
KRH51212	Soybean	nucleus	31.64	26.68
KRH01937	Soybean	nucleus	31.81	26.63
KRG96540	Soybean	cytosol, mitochondrion	34.18	26.3
KRH68277	Soybean	nucleus	34.01	25.7
KRH36905	Soybean	nucleus	35.53	18.03
KRH11875	Soybean	endoplasmic reticulum	35.87	17.65
KRH77709	Soybean	nucleus	31.81	17.03
KRH27757	Soybean	nucleus	31.81	16.98

Protein Annotations

EntrezGene:100781668	Gene3D:3.40.50.300	MapMan:35.1	UniProt:A0A0R0ETL8	EMBL:ACUP02010793	InterPro:DEAD/DEAH_box_helicase_dom
EnsemblPlantsGene:GLYMA_18G000800	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0005488	GO:GO:0005524
InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRG97325
ProteinID:KRG97325	ProteinID:KRG97325.1	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF363	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487
SMART:SM00490	SUPFAM:SSF52540	UniParc:UPI0001D62D63	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr18:+:106361..110715

Molecular Weight (calculated)

64387.8 Da

IEP (calculated)

8.299

GRAVY (calculated)

-0.461

Length

591 amino acids

Sequence
(BLAST)

001: MRTSWADLAA NSASENAGTS NSTAPSRPVY VPPHLRNRGP SESLAPAPPS NNNNNVGSRW GALPPRNGWG NRSGGWDRRE VNPFGGQEDA AAEEELGGEE
101: QQESTGINFD AYEDIPVETS GENVPPAVNT FAEIDLGNAL NQNIRRCKYV KPTPVQRHAI PISLAGRDLM ACAQTGSGKT AAFCFPIISG IMRGQAQVLQ
201: RPPPRGVRTV YPLALVLSPT RELSMQIHEE ARKFSYQTGV RVVVAYGGAP INQQLRELER GVDILVATPG RLVDLLERAR VSLQMIRYLA LDEADRMLDM
301: GFEPQIRKIV EQMDMPPAAA RQTMLFSATF PKEIQRLASD FLSNYIFLAV GRVGSSTDLI VQRVEYVQES DKRSHLMDLL HAQKANGVQG KQALTLVFVE
401: TKKGADALEH WLCRNNFPAT TIHGDRTQQE RELALRSFKS GNTPILVATD VAARGLDIPH VAHVVNFDLP NDIDDYVHRI GRTGRAGKKG LATAFFNDNN
501: ASLARALADL MQEANQEVPD WLSRFAARSS FGGGRNRRSG GGRFGGRDFR REGSFSRGGS DYYSAGNNSS GYGTSGGYGG GYGPGVTSAW D

Best Arabidopsis Sequence Match ( AT2G42520.1 )
(BLAST)

001: MSASWADVAD SENTGSGSSN QNSHPSRPAY VPPHLRNRPA ASEPVAPLPA NDRVGYGGPP SGSRWAPGGS GVGVGGGGGY RADAGRPGSG SGYGGRGGGG
101: WNNRSGGWDR REREVNPFEN DDSEPEPAFT EQDNTVINFD AYEDIPIETS GDNVPPPVNT FAEIDLGEAL NLNIRRCKYV KPTPVQRHAI PILLEGRDLM
201: ACAQTGSGKT AAFCFPIISG IMKDQHVQRP RGSRTVYPLA VILSPTRELA SQIHDEAKKF SYQTGVKVVV AYGGTPINQQ LRELERGVDI LVATPGRLND
301: LLERARVSMQ MIRFLALDEA DRMLDMGFEP QIRKIVEQMD MPPRGVRQTL LFSATFPREI QRLAADFLAN YIFLAVGRVG SSTDLIVQRV EFVLDSDKRS
401: HLMDLLHAQR ENGIQGKQAL TLVFVETKRG ADSLENWLCI NGFPATSIHG DRTQQEREVA LKAFKSGRTP ILVATDVAAR GLDIPHVAHV VNFDLPNDID
501: DYVHRIGRTG RAGKSGLATA FFNDGNTSLA RPLAELMQEA NQEVPEWLTR YASRSSFGGG KNRRSGGRFG GRDFRREGSF GSGRGGYGGG GGGYGGGGGY
601: GGGGGYGGGG GYGGGYGGAS SGGYGGEPPS AWD

Arabidopsis Description

RH37DEAD-box ATP-dependent RNA helicase 37 [Source:UniProtKB/Swiss-Prot;Acc:Q84W89]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.