CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH03228	Soybean	nucleus	93.14	94.68
GSMUA_Achr8P01340_001	Banana	cytosol	52.61	84.07
EES04084	Sorghum	cytosol	67.65	71.63
Solyc03g112350.2.1	Tomato	nucleus	76.14	71.58
AT5G63120.2	Thale cress	cytosol	68.46	70.9
HORVU3Hr1G092600.1	Barley	cytosol	66.18	70.56
HORVU3Hr1G092610.1	Barley	cytosol	66.18	70.56
TraesCS3B01G451900.1	Wheat	cytosol	66.18	70.56
TraesCS3A01G416900.1	Wheat	cytosol	66.18	70.56
TraesCS3D01G412400.2	Wheat	cytosol	66.18	70.43
Bra035857.1-P	Field mustard	cytosol	67.81	70.22
CDY48128	Canola	cytosol	68.14	70.2
CDY16735	Canola	cytosol	67.65	70.05
KRH47127	Soybean	nucleus	58.01	70.02
KRH44155	Soybean	cytosol	57.68	69.63
Zm00001d042416_P002	Maize	extracellular, plasma membrane	67.48	64.73
KRH48684	Soybean	cytosol, endoplasmic reticulum	50.16	64.5
PGSC0003DMT400046821	Potato	cytosol	74.51	63.51
VIT_17s0000g09130.t01	Wine grape	cytosol	63.24	63.34
KRH74291	Soybean	nucleus	32.35	36.87
KRH39630	Soybean	nucleus	32.35	36.87
KRG97325	Soybean	endoplasmic reticulum	32.68	33.84
KRH58901	Soybean	nucleus	33.5	33.39
KRG93254	Soybean	endoplasmic reticulum	42.32	33.38
KRH42811	Soybean	endoplasmic reticulum	33.66	33.28
KRH31589	Soybean	nucleus	32.84	33.28
KRH56577	Soybean	nucleus	41.99	33.16
KRH38030	Soybean	endoplasmic reticulum	33.01	33.06
KRH71800	Soybean	plastid	32.84	32.9
KRH20283	Soybean	plastid	31.37	32.76
KRH03709	Soybean	plastid	31.21	31.31
KRH30661	Soybean	endoplasmic reticulum	28.43	30.8
KRG98124	Soybean	endoplasmic reticulum	28.59	30.65
KRG96540	Soybean	cytosol, mitochondrion	38.24	30.47
KRH68534	Soybean	cytosol	29.09	30.32
KRG94409	Soybean	cytosol	28.92	30.1
KRH68277	Soybean	nucleus	37.91	29.67
KRH01937	Soybean	nucleus	29.41	25.5
KRH51212	Soybean	nucleus	28.76	25.11
KRH36905	Soybean	nucleus	42.32	22.23
KRH11875	Soybean	endoplasmic reticulum	42.48	21.65
KRH77709	Soybean	nucleus	36.27	20.11
KRH27757	Soybean	nucleus	36.11	19.96

Protein Annotations

EntrezGene:100777610	MapMan:16.4.1.1.4	Gene3D:3.40.50.300	EMBL:ACUP02002814	InterPro:DEAD/DEAH_box_helicase_dom	EnsemblPlantsGene:GLYMA_05G041000
GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824	GO:GO:0004004	GO:GO:0004386
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0005730	GO:GO:0005737	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009987
GO:GO:0010501	GO:GO:0016787	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	UniProt:I1K042	InterPro:IPR001650
InterPro:IPR014001	InterPro:IPR014014	EnsemblPlants:KRH57127	ProteinID:KRH57127	ProteinID:KRH57127.1	InterPro:P-loop_NTPase
PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195
PANTHER:PTHR24031	PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490
SUPFAM:SSF52540	UniParc:UPI00023C5163	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr5:-:3693128..3698506

Molecular Weight (calculated)

66525.9 Da

IEP (calculated)

10.500

GRAVY (calculated)

-0.419

Length

612 amino acids

Sequence
(BLAST)

001: MNPYDSRYSD ASSFRGRRSD FVGPIPPPSF VGRGGAVSYG VPGPNGFRSA PVAPVPPFVP PSGGFNVGRG GGRAGYGHVS DRMGRSGGGR GRGGGGGGGG
101: RAGAHGFRGS GRGGRHGGGS SRDDLNNIAL PKQDFKNLVP FEKNFYVECP AVRAMSEQEV LHYRASREIT VQGNDVPKPV RMFHEANFPD YCLEVIANLG
201: FAEPTPIQAQ GWPMALKGRD LIGIAETGSG KTLSYLLPAL VHVNAQPRLA HGDGPIVLVL APTRELAVQI QEEALKFGSR ANKRSTCIYG GAPKGPQIRE
301: LKRGVEIVIA TPGRLIDMLE AQHTNLKRVT YLVLDEADRM LDMGFEPQIR KIVAQIRPDR QTLLWSATWP REVETLARQF LRNPYKVIIG SPYLKANQSI
401: NQVVEVLTDM EKYNRLIRLL KEVMDGSRIL IFMETKKGCD QVTRQMRVDG WPALSIHGDK NQAERDWVLA EFKSGRSPIM TATDVAARGL DVKDIKCVIN
501: YDFPSSLEDY VHRIGRTGRA GAKGTAYTFF THANAKFARD LIKILQDAGQ VVSPALSALV RSAGSGQFGS GGSFRSRGRG GYGNRGLTSG SNAIPLGKKN
601: ENRRKEDGMK KK

Best Arabidopsis Sequence Match ( AT1G55150.1 )
(BLAST)

001: MSRYDSRTGD STSYRDRRSD SGFGGTSSYG SSGSHTSSKK DNDGNESPRK LDLDGLTPFE KNFYVESPAV AAMTDTEVEE YRKLREITVE GKDIPKPVKS
101: FRDVGFPDYV LEEVKKAGFT EPTPIQSQGW PMAMKGRDLI GIAETGSGKT LSYLLPAIVH VNAQPMLAHG DGPIVLVLAP TRELAVQIQQ EASKFGSSSK
201: IKTTCIYGGV PKGPQVRDLQ KGVEIVIATP GRLIDMMESN NTNLRRVTYL VLDEADRMLD MGFDPQIRKI VSHIRPDRQT LYWSATWPKE VEQLSKKFLY
301: NPYKVIIGSS DLKANRAIRQ IVDVISESQK YNKLVKLLED IMDGSRILVF LDTKKGCDQI TRQLRMDGWP ALSIHGDKSQ AERDWVLSEF RSGKSPIMTA
401: TDVAARGLDV KDVKYVINYD FPGSLEDYVH RIGRTGRAGA KGTAYTFFTV ANARFAKELT NILQEAGQKV SPELASMGRS TAPPPPGLGG FRDRGSRRGW
501: S

Arabidopsis Description

DEA(D/H)-box RNA helicase family protein [Source:TAIR;Acc:AT1G55150]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.