CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
mitochondrion 2
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY16735	Canola	cytosol	98.65	99.15
AT5G63120.2	Thale cress	cytosol	91.92	92.39
GSMUA_Achr8P01340_001	Banana	cytosol	51.68	80.16
KRH03228	Soybean	nucleus	69.7	68.77
EES04084	Sorghum	cytosol	66.5	68.34
KRH57127	Soybean	endoplasmic reticulum, nucleus	70.2	68.14
TraesCS3B01G451900.1	Wheat	cytosol	64.48	66.72
HORVU3Hr1G092610.1	Barley	cytosol	64.48	66.72
HORVU3Hr1G092600.1	Barley	cytosol	64.48	66.72
TraesCS3D01G412400.2	Wheat	cytosol	64.48	66.61
TraesCS3A01G416900.1	Wheat	cytosol	64.31	66.55
CDY10596	Canola	nucleus	55.56	66.13
CDY02459	Canola	cytosol	55.56	66.13
Solyc03g112350.2.1	Tomato	nucleus	72.22	65.9
Zm00001d042416_P002	Maize	extracellular, plasma membrane	65.99	61.44
PGSC0003DMT400046821	Potato	cytosol	70.71	58.5
VIT_17s0000g09130.t01	Wine grape	cytosol	58.42	56.79
CDY47978	Canola	plastid	29.46	41.87
CDX98304	Canola	cytosol, plastid	29.63	38.18
CDY41747	Canola	nucleus	33.33	36.67
CDX84672	Canola	cytosol	27.44	36.47
CDY66221	Canola	nucleus	32.83	36.38
CDY65864	Canola	nucleus	32.66	36.33
CDY28671	Canola	cytosol	40.07	35.9
CDX91943	Canola	cytosol	40.07	35.79
CDY06034	Canola	cytosol	33.84	34.96
CDX91036	Canola	cytosol	40.07	34.8
CDX74304	Canola	cytosol	40.07	34.59
CDX67749	Canola	cytosol	34.34	33.89
CDX83333	Canola	nucleus	36.2	33.75
CDX71948	Canola	cytosol	33.84	33.67
CDX87315	Canola	cytosol	29.29	33.59
CDY39973	Canola	cytosol	29.29	33.59
CDY61276	Canola	cytosol	29.29	33.53
CDY49232	Canola	cytosol	35.19	33.44
CDY14843	Canola	cytosol, plastid	34.34	33.33
CDY38671	Canola	cytosol	28.96	33.14
CDX98301	Canola	cytosol	33.5	33.11
CDX84112	Canola	nucleus	16.67	33.0
CDX71944	Canola	cytosol	35.19	32.97
CDX67949	Canola	cytosol	29.97	32.72
CDX67752	Canola	cytosol	34.85	32.7
CDX85591	Canola	cytosol	40.24	31.78
CDY72529	Canola	cytosol	33.33	31.78
CDX80096	Canola	cytosol	37.37	30.49
CDY37796	Canola	cytosol	37.54	30.38
CDX95719	Canola	cytosol	37.54	30.34
CDY53786	Canola	nucleus	29.29	29.49
CDY37696	Canola	nucleus	28.96	29.15
CDX74101	Canola	cytosol	40.07	27.17
CDY08048	Canola	nucleus	40.24	27.16
CDX79541	Canola	nucleus	27.95	26.39
CDX88990	Canola	cytosol, plastid	24.75	26.34
CDX79384	Canola	cytosol	16.67	25.38
CDY44720	Canola	nucleus	34.68	23.84
CDY41597	Canola	nucleus	30.13	23.16
CDY31513	Canola	nucleus	35.19	18.9
CDY00570	Canola	nucleus	17.51	17.13
CDX91039	Canola	cytosol	4.04	13.71
CDX91037	Canola	cytosol	4.04	13.71

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	GO:A0A078IG64	UniProt:A0A078IG64	EnsemblPlants:CDY48128	ProteinID:CDY48128
ProteinID:CDY48128.1	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676	GO:GO:0003824
GO:GO:0004386	GO:GO:0005488	GO:GO:0005524	GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00088925001	InterPro:Helicase_ATP-bd
InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270
PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031
PANTHER:PTHR24031:SF269	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540
UniParc:UPI0004EAFF22	SEG:seg	:	:	:	:

Description

BnaCnng15700DBnaCnng15700D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IG64]

Coordinates

chrLK032755:-:60636..64385

Molecular Weight (calculated)

64591.2 Da

IEP (calculated)

10.171

GRAVY (calculated)

-0.468

Length

594 amino acids

Sequence
(BLAST)

001: MSSHDRRFAD PNSYRQRSPA PVRSSQPMDP SAAPYNPRYS GGGGDVGGGG GGYRPAPVMS GDGSGYGHYP SFHPPSNGFS VGRGGGRGGY GGYGGVRGGY
101: GGGGRGGSGR RELDSVSLPK QSFGNLVHFE KNFYVESPVV QAMTEQDVAM YRTEKDISVE GRDVPKPIKM FQDANFPDNI LDAIAKLGFT EPTPIQAQGW
201: PMALKGRDLI GIAETGSGKT LAYLLPALVH VSAQPRLGQD DGPIVLILAP TRELAVQIQE ESRKFGLRSG VRSTCIYGGA PKGRQIHDLR RGVEIVIATP
301: GRLIDMLECQ HTNLKRVTYL VLDEADRMLD MGFEPQIRKI VSQIRPDRQT LLWSATWPRE VETLARQFLR DPYKAIIGSA DLKANQSINQ VIEIVQTPEK
401: YTRLLTLLKQ LMDGSKILIF VETKRGCDQV TRQLRMDGWP ALAIHGDKNQ TERDRVLSEF KSGRSPIMTA TDVAARGLDV KDIKCVVNYD FPTSLEDYIH
501: RIGRTGRAGA KGMAMTFFTH DNAKFARELI KILQEAGQVV PPTLSALVRS SGSGGGGGGG GRSFRSRGGG RGGFGDKRPR STSNFVPHGG KRTW

Best Arabidopsis Sequence Match ( AT5G63120.2 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLDVKDIK CVVNYDFPNT LEDYIHRIGR
501: TGRAGAKGMA FTFFTHDNAK FARELVKILQ EAGQVVPPTL SALVRSSGSG YGGSGGGRNF RPRGGGRGGG FGDKRSRSTS NFVPHGGKRT W

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.