Factsheet for TraesCS3D01G412400.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3A01G416900.1	Wheat	cytosol	99.3	99.48
TraesCS3B01G451900.1	Wheat	cytosol	98.78	98.95
HORVU3Hr1G092610.1	Barley	cytosol	98.26	98.43
HORVU3Hr1G092600.1	Barley	cytosol	98.26	98.43
EES04084	Sorghum	cytosol	85.22	84.78
GSMUA_Achr8P01340_001	Banana	cytosol	52.17	78.33
Zm00001d042416_P002	Maize	extracellular, plasma membrane	84.17	75.86
TraesCS3D01G106000.1	Wheat	cytosol	57.91	67.14
KRH03228	Soybean	nucleus	69.91	66.78
KRH57127	Soybean	endoplasmic reticulum, nucleus	70.43	66.18
AT5G63120.2	Thale cress	cytosol	67.13	65.31
CDY16735	Canola	cytosol	66.43	64.64
Bra035857.1-P	Field mustard	cytosol	66.43	64.64
CDY48128	Canola	cytosol	66.61	64.48
Solyc03g112350.2.1	Tomato	nucleus	72.17	63.75
PGSC0003DMT400046821	Potato	cytosol	70.09	56.13
VIT_17s0000g09130.t01	Wine grape	cytosol	59.13	55.65
TraesCS5D01G125100.1	Wheat	nucleus	36.0	38.76
TraesCS3D01G131100.11	Wheat	cytosol	43.3	38.13
TraesCS4D01G148700.1	Wheat	golgi	32.17	30.78
TraesCS5D01G465100.1	Wheat	cytosol	33.39	30.19
TraesCS3D01G202500.3	Wheat	nucleus	41.91	29.79
TraesCS5D01G159000.1	Wheat	cytosol	29.91	28.29
TraesCS4D01G184200.1	Wheat	mitochondrion	37.74	27.5
TraesCS2D01G149500.1	Wheat	nucleus	36.17	25.21
TraesCS4D01G041400.1	Wheat	nucleus	30.43	21.85
TraesCS7D01G294500.1	Wheat	nucleus	34.78	19.47
TraesCS3D01G100900.1	Wheat	cytosol	44.0	19.11

Protein Annotations

MapMan:16.4.1.1.4	Gene3D:3.40.50.300	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003729	GO:GO:0005488	GO:GO:0005524	InterPro:Helicase_ATP-bd	InterPro:Helicase_C
InterPro:IPR001650	InterPro:IPR014001	InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271
ScanProsite:PS00039	PFscan:PS51192	PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF269
InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif	SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS3D01G412400
EnsemblPlants:TraesCS3D01G412400.2	TIGR:cd00079	TIGR:cd00268	SEG:seg	:	:

Description

No Description!

Coordinates

chr3D:-:524782001..524786194

Molecular Weight (calculated)

62332.7 Da

IEP (calculated)

9.896

GRAVY (calculated)

-0.372

Length

575 amino acids

Sequence
(BLAST)

001: MNPYADNRYA DPSSYRDRRS DLAAAPILAP PVPVAPAQNP YAAPYTPMAA PVGGFGQGGG GYGGGMGYGG RGRGGGGGGG GPGGFRGGGG RGGSNGRDGL
101: DSLSLPKADF RGLIPFEKSF YVECPAVQAM SDTEVAQYRQ LRDITVEGRE VPKPIRFFHE ANFPDYCMQA IAKSGFVEPT PIQAQGWPMA LKGRDVIGIA
201: ETGSGKTLSY ILPGLVHVGA QPRLEQGDGP IVLILAPTRE LAVQIQAEAT KFGSYSRTRS TCIYGGAPKG PQIRDLRRGV EIVIATPGRL IDMLEAGHTN
301: LRRVTYLVLD EADRMLDMGF EPQIRKILAQ IRPDRQTLYW SATWPREVET LARQFLQNPY KVMIGTAELK ANHSIQQIVE VISDHEKYPR LSKLLSDLMD
401: GSRILIFFQT KKECDKVTRQ LRMDGWPALS IHGDKAQSER DYVLAEFKNG KSPIMAATDV AARGLDVKDI KCVINFDFPT TIEDYIHRIG RTGRAGATGM
501: AFTFFTHSNA KYSRNLVKIL REAGQVVNPA LEAMSKSSGS MGGGGNFRSR GRGGFGGGYG GNRSGSNSIP VRRRY

Best Arabidopsis Sequence Match ( AT5G63120.2 )
(BLAST)

001: MSSYDRRFAD PNSYRQRSGA PVGSSQPMDP SAAPYNPRYT GGGGGYGPSP VMAGDNSGYN RYPSFQPPSG GFSVGRGGGR GGYGQYGDRN GGGNWGGGGG
101: RGGSSKRELD SVSLPKQNFG NLVHFEKNFY VESPTVQAMT EQDVAMYRTE RDISVEGRDV PKPMKMFQDA NFPDNILEAI AKLGFTEPTP IQAQGWPMAL
201: KGRDLIGIAE TGSGKTLAYL LPALVHVSAQ PRLGQDDGPI VLILAPTREL AVQIQEESRK FGLRSGVRST CIYGGAPKGP QIRDLRRGVE IVIATPGRLI
301: DMLECQHTNL KRVTYLVLDE ADRMLDMGFE PQIRKIVSQI RPDRQTLLWS ATWPREVETL ARQFLRDPYK AIIGSTDLKA NQSINQVIEI VPTPEKYNRL
401: LTLLKQLMDG SKILIFVETK RGCDQVTRQL RMDGWPALAI HGDKTQSERD RVLAEFKSGR SPIMTATDVA ARGLDVKDIK CVVNYDFPNT LEDYIHRIGR
501: TGRAGAKGMA FTFFTHDNAK FARELVKILQ EAGQVVPPTL SALVRSSGSG YGGSGGGRNF RPRGGGRGGG FGDKRSRSTS NFVPHGGKRT W

Arabidopsis Description

RH30DEAD-box ATP-dependent RNA helicase 30 [Source:UniProtKB/Swiss-Prot;Acc:Q8W4R3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.