Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2B01G170700.1 | Wheat | nucleus | 96.85 | 78.56 |
| HORVU2Hr1G025790.1 | Barley | nucleus | 90.3 | 73.11 |
| CDY72529 | Canola | cytosol | 47.64 | 63.08 |
| TraesCS7D01G294500.1 | Wheat | nucleus | 76.73 | 61.64 |
| Os08t0159900-01 | Rice | extracellular, nucleus | 75.64 | 59.49 |
| Zm00001d024533_P001 | Maize | nucleus | 76.48 | 59.25 |
| OQU79814 | Sorghum | nucleus | 67.15 | 56.13 |
| CDY44720 | Canola | nucleus | 53.94 | 51.5 |
| AT3G09620.2 | Thale cress | nucleus | 60.61 | 50.51 |
| CDY41597 | Canola | nucleus | 47.03 | 50.19 |
| Bra029779.1-P | Field mustard | nucleus | 53.94 | 50.17 |
| KRH77709 | Soybean | nucleus | 65.21 | 48.73 |
| KRH27757 | Soybean | nucleus | 64.85 | 48.33 |
| PGSC0003DMT400011665 | Potato | nucleus | 64.12 | 47.44 |
| CDY31513 | Canola | nucleus | 62.42 | 46.56 |
| Solyc12g098700.1.1 | Tomato | nucleus | 64.24 | 46.21 |
| Bra025856.1-P | Field mustard | nucleus | 64.97 | 45.77 |
| GSMUA_Achr10P... | Banana | cytosol | 55.52 | 45.75 |
| VIT_03s0038g04130.t01 | Wine grape | nucleus | 63.52 | 45.68 |
| AT1G20920.3 | Thale cress | nucleus | 64.12 | 45.37 |
| TraesCS3D01G106000.1 | Wheat | cytosol | 24.12 | 40.12 |
| TraesCS3D01G412400.2 | Wheat | cytosol | 25.21 | 36.17 |
| TraesCS4D01G184200.1 | Wheat | mitochondrion | 31.39 | 32.83 |
| TraesCS5D01G125100.1 | Wheat | nucleus | 21.21 | 32.77 |
| TraesCS5D01G159000.1 | Wheat | cytosol | 21.7 | 29.44 |
| TraesCS4D01G148700.1 | Wheat | golgi | 20.97 | 28.79 |
| TraesCS3D01G131100.11 | Wheat | cytosol | 22.42 | 28.33 |
| TraesCS5D01G465100.1 | Wheat | cytosol | 21.58 | 27.99 |
| TraesCS4D01G041400.1 | Wheat | nucleus | 21.45 | 22.1 |
| TraesCS3D01G202500.3 | Wheat | nucleus | 21.21 | 21.63 |
| TraesCS3D01G100900.1 | Wheat | cytosol | 23.27 | 14.5 |
Protein Annotations
| MapMan:16.4.7.1.2 | Gene3D:3.40.50.300 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0005488 | GO:GO:0005524 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 |
| PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS |
| InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | EnsemblPlantsGene:TraesCS2D01G149500 | EnsemblPlants:TraesCS2D01G149500.1 |
| TIGR:cd00079 | TIGR:cd00268 | SEG:seg | : | : | : |
Description
No Description!
Coordinates
chr2D:-:90821868..90824345
Molecular Weight (calculated)
90308.8 Da
IEP (calculated)
4.917
GRAVY (calculated)
-0.486
Length
825 amino acids
Sequence
(BLAST)
(BLAST)
001: MEEDMAAEQQ RLEDEMERRR RRVREWQEKK RREQQEDGDG SAVADGAGKS GMKWSLDGEE SDDDGGAGTG AMDVDLPNGG TSRAGMEEDE IDPLDAFMNS
101: IQMSPATTSM ESMIAYGDYH EGGMVSNDAA PTGRIMQGDE SDSDYNDDPE GGSDDATELI NPVKKTKAEK LVTADHSKID YQPFRKNFYT EAKDIKEMPA
201: EDAAAYRERL DLKVRGKGIP KPIKTWIQSG LTSKLLSTIK KLGFDKPMAI QAQALPVIMS GRDCIGVAKT GSGKTLAFVL PMLRHVKDQP PAAPGDGPIG
301: LVMAPTRELV VQIYSDIKKF SKAFGVNCVA VYGGCAVAQQ ISELKRGAEI VVCTPGRMID VLCTSAGKIT NLRRVTFLVL DEADRMFDMG FEPQITRIVQ
401: NTRPDRQTVL FSATFPRQVE TLARRLLAKP VEIQMGGRSV VNRDITQLVE VRPDGERFLR LLELLGEWSA KGKILVFVRA QDKCDSLLKE LFQHGYPCLS
501: LHGGKDQNDR ESTLADFKSN VCSLLIATSI AARGLDVKDL ELVVNYDVTN HYEDYVHRVG RTGRAGRKGC AVTFISDEEE RYAPDLVKAL ELSGQAVPED
601: LKALADRFMA KVKQGTEKAH GTGYGGSGYK FDHEEDEARQ SARRAQGRAH GYEEDEPEPD SDHYEEEEDG GAAALAAPPP MAAIAAASNA SQPALLPLPA
701: APNQQDIAAA AVNVQSVLAR IQAQAAPEHY QAELEINDFP QHARWKVTRR ETLAPIEEWT GAAVTTRGTF IPPGQIVAAN ERKLYLYIEG PNESSVSKAK
801: AQLKSVVEDC ANQALNLPAG KYSVI
101: IQMSPATTSM ESMIAYGDYH EGGMVSNDAA PTGRIMQGDE SDSDYNDDPE GGSDDATELI NPVKKTKAEK LVTADHSKID YQPFRKNFYT EAKDIKEMPA
201: EDAAAYRERL DLKVRGKGIP KPIKTWIQSG LTSKLLSTIK KLGFDKPMAI QAQALPVIMS GRDCIGVAKT GSGKTLAFVL PMLRHVKDQP PAAPGDGPIG
301: LVMAPTRELV VQIYSDIKKF SKAFGVNCVA VYGGCAVAQQ ISELKRGAEI VVCTPGRMID VLCTSAGKIT NLRRVTFLVL DEADRMFDMG FEPQITRIVQ
401: NTRPDRQTVL FSATFPRQVE TLARRLLAKP VEIQMGGRSV VNRDITQLVE VRPDGERFLR LLELLGEWSA KGKILVFVRA QDKCDSLLKE LFQHGYPCLS
501: LHGGKDQNDR ESTLADFKSN VCSLLIATSI AARGLDVKDL ELVVNYDVTN HYEDYVHRVG RTGRAGRKGC AVTFISDEEE RYAPDLVKAL ELSGQAVPED
601: LKALADRFMA KVKQGTEKAH GTGYGGSGYK FDHEEDEARQ SARRAQGRAH GYEEDEPEPD SDHYEEEEDG GAAALAAPPP MAAIAAASNA SQPALLPLPA
701: APNQQDIAAA AVNVQSVLAR IQAQAAPEHY QAELEINDFP QHARWKVTRR ETLAPIEEWT GAAVTTRGTF IPPGQIVAAN ERKLYLYIEG PNESSVSKAK
801: AQLKSVVEDC ANQALNLPAG KYSVI
0001: MEVEKSKYRS EDLDVVEEEA DLKKSRRDRD RSNERKKDKG SEKRREKDRR KKRVKSSDSE DDYDRDDDEE REKRKEKERE RRRRDKDRVK RRSERRKSSD
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
0101: SEDDVEEEDE RDKRRVNEKE RGHREHERDR GKDRKRDRER EERKDKERER EKDRERRERE REEREKERVK ERERREREDG ERDRREREKE RGSRRNRERE
0201: RSREVGNEES DDDVKRDLKR RRKEGGERKE KEREKSVGRS SRHEDSPKRK SVEDNGEKKE KKTREEELED EQKKLDEEVE KRRRRVQEWQ ELKRKKEEAE
0301: SESKGDADGN EPKAGKAWTL EGESDDEEGH PEEKSETEMD VDEETKPEND GDAKMVDLEN ETAATVSESG GDGAVDEEEI DPLDAFMNTM VLPEVEKFCN
0401: GAPPPAVNDG TLDSKMNGKE SGDRPKKGFN KALGRIIQGE DSDSDYSEPK NDDDPSLDED DEEFMKRVKK TKAEKLSLVD HSKIEYEPFR KNFYIEVKDI
0501: SRMTQEEVNT YRKELELKVH GKDVPRPIKF WHQTGLTSKI LDTMKKLNYE KPMPIQTQAL PIIMSGRDCI GVAKTGSGKT LGFVLPMLRH IKDQPPVEAG
0601: DGPIGLVMAP TRELVQQIHS DIRKFSKPLG IRCVPVYGGS GVAQQISELK RGTEIVVCTP GRMIDILCTS SGKITNLRRV TFLVMDEADR MFDMGFEPQI
0701: TRIIQNIRPE RQTVLFSATF PRQVETLARK VLNKPVEIQV GGRSVVNKDI TQLVEVRPES DRFLRLLELL GEWSEKGKIL VFVQSQEKCD ALYRDMIKSS
0801: YPCLSLHGGK DQTDRESTIS DFKNDVCNLL IATSVAARGL DVKELELVVN FDAPNHYEDY VHRVGRTGRA GRKGCAVTFI SEDDAKYAPD LVKALELSEQ
0901: PVPDDLKALA DGFMVKVKQG IEQAHGTGYG GSGFKFNEEE EEVRKAAKKA QAKEYGFEED KSDSEDENDV VRKAGGGEIS QQQATFAQIA AIAAAAKAAA
1001: AAPVSAPVTA NQLLANGGGL AAMPGVLPVT VPTLPSEGAG RAAAMVAAMN LQHNLAKIQA DAMPEHYEAE LEINDFPQNA RWKVTHKETL GPISEWTGAA
1101: ITTRGQFYPT GRIPGPGERK LYLFIEGPSE KSVKHAKAEL KRVLEDITNQ AMSSLPGGAS GRYSVL
Arabidopsis Description
RH42DEAD-box ATP-dependent RNA helicase 42 [Source:UniProtKB/Swiss-Prot;Acc:Q8H0U8]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.