Factsheet for TraesCS4D01G041400.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 3
mitochondrion 3
nucleus 2

Predictors

GFP

MS/MS

Papers

nucleus: 26228564

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G270200.1	Wheat	nucleus	90.64	99.86
TraesCS4B01G043900.1	Wheat	nucleus	90.76	99.73
HORVU4Hr1G007110.17	Barley	mitochondrion	92.38	96.1
Zm00001d033704_P007	Maize	extracellular	83.52	90.65
Zm00001d013453_P001	Maize	nucleus	82.02	89.51
Os03t0708600-02	Rice	nucleus	82.15	89.4
KXG37746	Sorghum	nucleus	85.64	84.9
GSMUA_Achr3P01410_001	Banana	nucleus	53.81	81.78
KRH01937	Soybean	nucleus	69.41	78.75
KRH51212	Soybean	nucleus	68.91	78.74
PGSC0003DMT400043101	Potato	nucleus	69.04	78.22
CDX84672	Canola	cytosol	43.57	78.08
CDY53786	Canola	nucleus	57.05	77.46
Solyc02g081290.2.1	Tomato	nucleus	62.67	76.88
VIT_03s0038g00010.t01	Wine grape	cytosol	68.29	76.83
VIT_09s0054g01810.t01	Wine grape	cytosol	67.92	76.73
Bra021872.1-P	Field mustard	nucleus	62.55	76.02
CDY37696	Canola	nucleus	54.93	74.58
AT2G33730.1	Thale cress	nucleus	67.54	73.81
PGSC0003DMT400024330	Potato	cytosol	60.3	72.2
Solyc02g068190.1.1	Tomato	cytosol, nucleus	59.55	72.05
CDX79541	Canola	nucleus	56.3	71.7
TraesCS3D01G106000.1	Wheat	cytosol	21.85	35.28
TraesCS4D01G148700.1	Wheat	golgi	23.35	31.11
TraesCS5D01G125100.1	Wheat	nucleus	20.35	30.52
TraesCS3D01G412400.2	Wheat	cytosol	21.85	30.43
TraesCS5D01G465100.1	Wheat	cytosol	23.85	30.03
TraesCS5D01G159000.1	Wheat	cytosol	20.6	27.14
TraesCS3D01G131100.11	Wheat	cytosol	21.35	26.19
TraesCS4D01G184200.1	Wheat	mitochondrion	23.97	24.33
TraesCS3D01G202500.3	Wheat	nucleus	23.85	23.61
TraesCS2D01G149500.1	Wheat	nucleus	22.1	21.45
TraesCS7D01G294500.1	Wheat	nucleus	24.22	18.89
TraesCS3D01G100900.1	Wheat	cytosol	22.22	13.44

Protein Annotations

MapMan:16.4.7.1.3	Gene3D:3.40.50.300	ncoils:Coil	InterPro:DEAD/DEAH_box_helicase_dom	GO:GO:0000166	GO:GO:0003674
GO:GO:0003676	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005737	InterPro:Helicase_ATP-bd	InterPro:Helicase_C	InterPro:IPR001650	InterPro:IPR014001
InterPro:IPR014014	InterPro:P-loop_NTPase	PFAM:PF00270	PFAM:PF00271	ScanProsite:PS00039	PFscan:PS51192
PFscan:PS51194	PFscan:PS51195	PANTHER:PTHR24031	PANTHER:PTHR24031:SF23	InterPro:RNA-helicase_DEAD-box_CS	InterPro:RNA_helicase_DEAD_Q_motif
SMART:SM00487	SMART:SM00490	SUPFAM:SSF52540	EnsemblPlantsGene:TraesCS4D01G041400	EnsemblPlants:TraesCS4D01G041400.1	TIGR:cd00079
TIGR:cd00268	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:-:19407759..19410164

Molecular Weight (calculated)

92162.9 Da

IEP (calculated)

9.776

GRAVY (calculated)

-0.974

Length

801 amino acids

Sequence
(BLAST)

001: MRPGLKSSYG PSSRSVSLWR NSRSRMQPDL FFPHLSANPP PTRTHRHGIS SLCRAAAAAM KRSFDAMEAK PVFLSKEERQ RLALERRQAA VADQRRSALD
101: ILQSLPRPPP PPPPSGAPRD SSSSHRDPSD RDRGDRDRDR DRDRDRDRRR DDDSRRDRDR DRDRDRDEPS RRDRDRDRDR DRDRDRDRDR DRDRDREHRD
201: RERGERDKDR EKDRLEKMAE REREKELEAI KEQYLGSKKP KKRVIKPSEK FRFSFDWENT EDTSRDMNML YQAPHEARLL YGRGFLAGID RREQKKAAAV
301: FEKETRAEQR RKFGVEDRPE DDVADKKKAA AAEMYDAFDM RVDRHWSEKG IEEMTERDWR IFREDFNISY KGSRIPRPMR NWPESKLGTE LLRAIEKVGY
401: KKPSPIQMAA IPLGLQQRDV IGIAETGSGK TAAFVLPMLS YITRLPPISE DNEAEGPYAV VMAPTRELAQ QIEEETVKFA TYLGIKVVSI VGGQSIEEQG
501: FKIRQGCEVV IATPGRLLDC LERRYAVLNQ CNYVVLDEAD RMIDMGFEPQ VVGVLDAMPS SNLKPENEEE ELDEKRIYRT TYMFSATMPP AVERLARKYL
601: RNPVVVTIGT AGKATDLITQ NVIMVKESEK MSRLQKILTD LGDKTAIVFC NTKKSADNRA KDLDKAGFRV TALHGGKSQD QREISLDGFR NRRFNVLVAT
701: DVAGRGIDIP DVAHVINYEM PSSVDTYTHR IGRTGRAGKK GLATSFLTLD NTDIFFDLKQ MLTQSNSPVP PELARHEASK FKPGSVPDRP PRRNDTVYAS
801: H

Best Arabidopsis Sequence Match ( AT2G33730.1 )
(BLAST)

001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN

Arabidopsis Description

RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.