Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra021872.1-P | Field mustard | nucleus | 85.54 | 95.14 |
| CDY53786 | Canola | nucleus | 75.99 | 94.41 |
| CDY37696 | Canola | nucleus | 72.85 | 90.51 |
| CDX84672 | Canola | cytosol | 54.57 | 89.49 |
| CDX79541 | Canola | nucleus | 73.12 | 85.21 |
| KRH51212 | Soybean | nucleus | 79.54 | 83.17 |
| KRH01937 | Soybean | nucleus | 79.4 | 82.44 |
| VIT_03s0038g00010.t01 | Wine grape | cytosol | 78.44 | 80.76 |
| GSMUA_Achr3P01410_001 | Banana | nucleus | 57.84 | 80.46 |
| VIT_09s0054g01810.t01 | Wine grape | cytosol | 77.63 | 80.25 |
| PGSC0003DMT400043101 | Potato | nucleus | 77.35 | 80.2 |
| Solyc02g081290.2.1 | Tomato | nucleus | 70.8 | 79.48 |
| AT1G28180.1 | Thale cress | cytosol | 38.2 | 76.09 |
| Zm00001d033704_P007 | Maize | extracellular | 74.76 | 74.25 |
| TraesCS4A01G270200.1 | Wheat | nucleus | 73.53 | 74.14 |
| Zm00001d013453_P001 | Maize | nucleus | 74.08 | 73.98 |
| TraesCS4B01G043900.1 | Wheat | nucleus | 73.53 | 73.94 |
| PGSC0003DMT400024330 | Potato | cytosol | 67.39 | 73.84 |
| Os03t0708600-02 | Rice | nucleus | 73.94 | 73.64 |
| Solyc02g068190.1.1 | Tomato | cytosol, nucleus | 66.17 | 73.26 |
| HORVU6Hr1G080730.2 | Barley | cytosol | 31.65 | 70.95 |
| HORVU4Hr1G007110.17 | Barley | mitochondrion | 73.81 | 70.26 |
| TraesCS6B01G364400.1 | Wheat | nucleus, plastid | 60.57 | 68.41 |
| TraesCS6B01G364300.1 | Wheat | nucleus, plastid | 60.44 | 68.26 |
| KXG37746 | Sorghum | nucleus | 75.17 | 68.19 |
| TraesCS1B01G445500.1 | Wheat | cytosol | 42.43 | 68.05 |
| TraesCS5B01G079300.1 | Wheat | nucleus | 66.44 | 67.73 |
| TraesCS4D01G041400.1 | Wheat | nucleus | 73.81 | 67.54 |
| HORVU3Hr1G031710.1 | Barley | mitochondrion | 23.33 | 65.52 |
| TraesCS1A01G415500.1 | Wheat | cytosol | 56.89 | 64.75 |
| HORVU1Hr1G083090.1 | Barley | cytosol | 22.1 | 64.54 |
| HORVU1Hr1G091050.3 | Barley | nucleus | 51.98 | 63.71 |
| OQU83862 | Sorghum | nucleus | 54.57 | 62.31 |
| HORVU5Hr1G044620.1 | Barley | cytosol, mitochondrion | 27.56 | 53.16 |
| AT1G55150.2 | Thale cress | cytosol | 23.47 | 32.7 |
| AT4G33370.1 | Thale cress | cytosol | 23.6 | 31.92 |
| AT3G58510.2 | Thale cress | cytosol | 25.65 | 30.72 |
| AT3G58570.1 | Thale cress | cytosol | 26.74 | 30.34 |
| AT2G42520.2 | Thale cress | nucleus, plastid | 26.19 | 30.33 |
| AT5G63120.2 | Thale cress | cytosol | 24.28 | 30.12 |
| AT1G31970.1 | Thale cress | cytosol | 21.83 | 29.8 |
| AT5G51280.1 | Thale cress | cytosol | 23.87 | 29.61 |
| AT3G01540.2 | Thale cress | cytosol | 24.15 | 28.59 |
| AT2G47330.1 | Thale cress | cytosol | 25.65 | 24.74 |
| AT5G14610.1 | Thale cress | cytosol | 23.87 | 24.58 |
| AT3G09620.2 | Thale cress | nucleus | 24.83 | 18.38 |
| AT1G20920.3 | Thale cress | nucleus | 28.24 | 17.75 |
| AT3G06480.1 | Thale cress | cytosol | 23.33 | 15.72 |
Protein Annotations
| MapMan:16.4.7.1.3 | Gene3D:3.40.50.300 | EntrezGene:817938 | UniProt:A0A178VYN8 | ProteinID:AAC69128.1 | ProteinID:AEC08875.1 |
| ArrayExpress:AT2G33730 | EnsemblPlantsGene:AT2G33730 | RefSeq:AT2G33730 | TAIR:AT2G33730 | RefSeq:AT2G33730-TAIR-G | EnsemblPlants:AT2G33730.1 |
| TAIR:AT2G33730.1 | EMBL:AY065194 | EMBL:AY093244 | Unigene:At.27506 | ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom |
| GO:GO:0000166 | GO:GO:0000375 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 |
| GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005682 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 |
| GO:GO:0006397 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008380 | GO:GO:0009987 | GO:GO:0010501 |
| GO:GO:0016787 | GO:GO:0071013 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | RefSeq:NP_180929.1 | ProteinID:OAP10954.1 | InterPro:P-loop_NTPase | UniProt:P93008 | PFAM:PF00270 |
| PFAM:PF00271 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | ScanProsite:PS00039 | PFscan:PS51192 |
| PFscan:PS51194 | PFscan:PS51195 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | UniParc:UPI00000A8B3F | SEG:seg | : |
Description
RH21DEAD-box ATP-dependent RNA helicase 21 [Source:UniProtKB/Swiss-Prot;Acc:P93008]
Coordinates
chr2:-:14265281..14268003
Molecular Weight (calculated)
85282.1 Da
IEP (calculated)
8.853
GRAVY (calculated)
-0.994
Length
733 amino acids
Sequence
(BLAST)
(BLAST)
001: MKRTINEVVG STSVNTLDSS IAKKPVFLTK KQREELALKR RQDQISEQRV RREQLGRPEP ETEDVSNGDT NRDKDRDRDR DRDRERDRDR ERDRGRDRDR
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
101: DRDRDRDRDR ERERDRERDR RERDREPDRR NREKEREEEV KAREKARVEK LVEREKEKEL DAIKEQYLGG KKPKKRVIRP SEKFRFSFDW ENTEDTSRDM
201: NVLYQNPHEA QLLFGRGFRA GMDRREQKKQ AAKHEKEMRD EIRKKDGIVE KPEEAAAQRV REEAADTYDS FDMRVDRHWS DKRLEEMTER DWRIFREDFN
301: ISYKGSRIPR PMRSWEESKL TSELLKAVER AGYKKPSPIQ MAAIPLGLQQ RDVIGIAETG SGKTAAFVLP MLAYISRLPP MSEENETEGP YAVVMAPTRE
401: LAQQIEEETV KFAHYLGFRV TSIVGGQSIE EQGLKITQGC EIVIATPGRL IDCLERRYAV LNQCNYVVLD EADRMIDMGF EPQVAGVLDA MPSSNLKPEN
501: EEEELDEKKI YRTTYMFSAT MPPGVERLAR KYLRNPVVVT IGTAGKTTDL ISQHVIMMKE SEKFFRLQKL LDELGEKTAI VFVNTKKNCD SIAKNLDKAG
601: YRVTTLHGGK SQEQREISLE GFRAKRYNVL VATDVVGRGI DIPDVAHVIN YDMPKHIEMY THRIGRTGRA GKSGVATSFL TLHDTEVFYD LKQMLVQSNS
701: AVPPELARHE ASRFKPGTVP DRPPRHSDTV YIN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.