Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 2
- cytosol 3
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT2G33730.1 | Thale cress | nucleus | 76.09 | 38.2 |
| AT1G55150.2 | Thale cress | cytosol | 39.13 | 27.38 |
| AT4G33370.1 | Thale cress | cytosol | 38.04 | 25.83 |
| AT1G31970.1 | Thale cress | cytosol | 36.96 | 25.33 |
| AT5G63120.2 | Thale cress | cytosol | 40.49 | 25.21 |
| AT3G58510.2 | Thale cress | cytosol | 40.76 | 24.51 |
| AT5G51280.1 | Thale cress | cytosol | 38.59 | 24.03 |
| AT2G42520.2 | Thale cress | nucleus, plastid | 41.03 | 23.85 |
| AT3G58570.1 | Thale cress | cytosol | 40.49 | 23.07 |
| AT3G01540.2 | Thale cress | cytosol | 37.77 | 22.46 |
| AT2G47330.1 | Thale cress | cytosol | 41.85 | 20.26 |
| AT5G14610.1 | Thale cress | cytosol | 37.23 | 19.24 |
| AT3G09620.2 | Thale cress | nucleus | 36.41 | 13.54 |
| AT3G06480.1 | Thale cress | cytosol | 36.96 | 12.5 |
| AT1G20920.3 | Thale cress | nucleus | 38.86 | 12.26 |
Protein Annotations
| MapMan:16.4.7.1.3 | Gene3D:3.40.50.300 | EntrezGene:3766805 | ArrayExpress:AT1G28180 | EnsemblPlantsGene:AT1G28180 | RefSeq:AT1G28180 |
| TAIR:AT1G28180 | RefSeq:AT1G28180-TAIR-G | EnsemblPlants:AT1G28180.1 | TAIR:AT1G28180.1 | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 |
| GO:GO:0000375 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003824 | GO:GO:0004004 |
| GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0005682 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 | GO:GO:0016787 | GO:GO:0071013 | InterPro:Helicase_ATP-bd |
| InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PANTHER:PTHR24031 | PANTHER:PTHR24031:SF25 | InterPro:RNA-helicase_DEAD-box_CS |
| SMART:SM00487 | SMART:SM00490 | SUPFAM:SSF52540 | TMHMM:TMhelix | UniParc:UPI0008488F04 | SEG:seg |
Description
P-loop containing nucleoside triphosphate hydrolases superfamily protein [Source:TAIR;Acc:AT1G28180]
Coordinates
chr1:-:9843035..9844561
Molecular Weight (calculated)
41842.8 Da
IEP (calculated)
8.428
GRAVY (calculated)
-0.247
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAIPLGLEQ RDVIGISATG SGKTAAFVLP MLAYISRLPP MREENQTEGP YALVMVPTRE LAHQIEEETV KFSRYLGFKA VSITGWESIE KQALKLSQGC
101: EIVIATPGRL LDCLERRYVV LNQCNYLVLD EADRMIDMDF EPQVSEVLDE KKIYRTTYMF SATMLLSVER LARKFLRNPV VVTIGETTKF ITQQVIMTKE
201: SDKFSRLKKL IDDLGDDKTA IVFVNTRNKV DYIVKNLEKV GRCRVTTLHA GKSQEQRDYS LEEFKKKRFN VLVTTDVLGR GLDILDLAQV INYDMPNTMD
301: LYTHRIGRTG RAGKTGVATT FLTLEDKDVF YGLKQKLNEC NSLVPPELAR HEASKFKPGT FPDRFSHF
101: EIVIATPGRL LDCLERRYVV LNQCNYLVLD EADRMIDMDF EPQVSEVLDE KKIYRTTYMF SATMLLSVER LARKFLRNPV VVTIGETTKF ITQQVIMTKE
201: SDKFSRLKKL IDDLGDDKTA IVFVNTRNKV DYIVKNLEKV GRCRVTTLHA GKSQEQRDYS LEEFKKKRFN VLVTTDVLGR GLDILDLAQV INYDMPNTMD
301: LYTHRIGRTG RAGKTGVATT FLTLEDKDVF YGLKQKLNEC NSLVPPELAR HEASKFKPGT FPDRFSHF
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.