Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY65864 | Canola | nucleus | 89.01 | 89.51 |
| CDY66221 | Canola | nucleus | 88.64 | 88.81 |
| Bra023227.1-P | Field mustard | nucleus | 89.39 | 88.4 |
| Bra035518.1-P | Field mustard | nucleus | 86.41 | 86.57 |
| CDY41747 | Canola | nucleus | 86.96 | 86.48 |
| CDX84112 | Canola | nucleus | 45.81 | 82.0 |
| Os07t0301200-01 | Rice | cytosol | 64.8 | 67.97 |
| EER96257 | Sorghum | cytosol | 64.8 | 67.97 |
| Zm00001d019449_P004 | Maize | nucleus | 63.69 | 67.32 |
| KRH74291 | Soybean | nucleus | 66.29 | 66.29 |
| KRH39630 | Soybean | nucleus | 66.11 | 66.11 |
| HORVU5Hr1G037290.3 | Barley | nucleus | 64.43 | 65.28 |
| TraesCS5D01G125100.1 | Wheat | nucleus | 64.62 | 64.98 |
| TraesCS5B01G120500.1 | Wheat | nucleus | 64.25 | 64.97 |
| TraesCS5A01G114400.1 | Wheat | nucleus | 64.43 | 64.67 |
| Solyc08g076200.2.1 | Tomato | nucleus | 63.69 | 61.84 |
| PGSC0003DMT400024026 | Potato | nucleus | 64.06 | 61.76 |
| GSMUA_Achr11P... | Banana | nucleus | 64.8 | 60.31 |
| VIT_02s0109g00380.t01 | Wine grape | cytosol | 67.41 | 57.64 |
| AT1G55150.2 | Thale cress | cytosol | 37.06 | 37.83 |
| AT1G28180.1 | Thale cress | cytosol | 25.33 | 36.96 |
| AT5G63120.2 | Thale cress | cytosol | 37.99 | 34.52 |
| AT3G58510.2 | Thale cress | cytosol | 33.15 | 29.09 |
| AT3G01540.2 | Thale cress | cytosol | 33.15 | 28.76 |
| AT4G33370.1 | Thale cress | cytosol | 28.49 | 28.23 |
| AT2G42520.2 | Thale cress | nucleus, plastid | 33.15 | 28.12 |
| AT3G58570.1 | Thale cress | cytosol | 32.96 | 27.4 |
| AT5G14610.1 | Thale cress | cytosol | 35.01 | 26.4 |
| AT5G51280.1 | Thale cress | cytosol | 29.05 | 26.4 |
| AT2G47330.1 | Thale cress | cytosol | 32.77 | 23.16 |
| AT2G33730.1 | Thale cress | nucleus | 29.8 | 21.83 |
| AT3G06480.1 | Thale cress | cytosol | 35.01 | 17.28 |
| AT3G09620.2 | Thale cress | nucleus | 30.17 | 16.36 |
| AT1G20920.3 | Thale cress | nucleus | 32.4 | 14.92 |
Protein Annotations
| Gene3D:3.40.50.300 | MapMan:35.1 | EntrezGene:840087 | UniProt:A0A178W5E1 | ProteinID:AAG50723.1 | ProteinID:AAG50784.1 |
| ProteinID:AEE31423.1 | EMBL:AJ010458 | ArrayExpress:AT1G31970 | EnsemblPlantsGene:AT1G31970 | RefSeq:AT1G31970 | TAIR:AT1G31970 |
| RefSeq:AT1G31970-TAIR-G | EnsemblPlants:AT1G31970.1 | TAIR:AT1G31970.1 | EMBL:AY080680 | EMBL:AY117298 | Unigene:At.20258 |
| ncoils:Coil | InterPro:DEAD/DEAH_box_helicase_dom | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0005730 | GO:GO:0005737 | GO:GO:0005829 |
| GO:GO:0006139 | GO:GO:0006364 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 | GO:GO:0010501 |
| GO:GO:0016787 | GO:GO:0042254 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | InterPro:IPR001650 | InterPro:IPR014001 |
| InterPro:IPR014014 | RefSeq:NP_174479.1 | ProteinID:OAP13729.1 | InterPro:P-loop_NTPase | PFAM:PF00270 | PFAM:PF00271 |
| PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 |
| PO:PO:0025022 | PO:PO:0025281 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF215 | UniProt:Q9C551 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 |
| SMART:SM00490 | SUPFAM:SSF52540 | Symbol:STRS1 | UniParc:UPI00000A2C19 | SEG:seg | : |
Description
RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
Coordinates
chr1:+:11479763..11482890
Molecular Weight (calculated)
59606.8 Da
IEP (calculated)
8.889
GRAVY (calculated)
-0.468
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.