Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
nucleus:
21132161
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH74291 | Soybean | nucleus | 95.53 | 95.53 |
| Os07t0301200-01 | Rice | cytosol | 67.97 | 71.29 |
| EER96257 | Sorghum | cytosol | 66.11 | 69.34 |
| Zm00001d019449_P004 | Maize | nucleus | 65.55 | 69.29 |
| TraesCS5D01G125100.1 | Wheat | nucleus | 67.23 | 67.6 |
| CDY65864 | Canola | nucleus | 67.23 | 67.6 |
| TraesCS5A01G114400.1 | Wheat | nucleus | 67.23 | 67.48 |
| TraesCS5B01G120500.1 | Wheat | nucleus | 66.67 | 67.42 |
| HORVU5Hr1G037290.3 | Barley | nucleus | 66.48 | 67.36 |
| CDY66221 | Canola | nucleus | 66.67 | 66.79 |
| Bra023227.1-P | Field mustard | nucleus | 66.85 | 66.11 |
| AT1G31970.1 | Thale cress | cytosol | 66.11 | 66.11 |
| CDY41747 | Canola | nucleus | 65.74 | 65.37 |
| VIT_02s0109g00380.t01 | Wine grape | cytosol | 75.98 | 64.97 |
| Bra035518.1-P | Field mustard | nucleus | 64.62 | 64.74 |
| PGSC0003DMT400024026 | Potato | nucleus | 67.04 | 64.63 |
| Solyc08g076200.2.1 | Tomato | nucleus | 66.48 | 64.56 |
| GSMUA_Achr11P... | Banana | nucleus | 69.09 | 64.3 |
| CDX84112 | Canola | nucleus | 30.17 | 54.0 |
| KRH47127 | Soybean | nucleus | 37.43 | 39.65 |
| KRH44155 | Soybean | cytosol | 37.24 | 39.45 |
| KRH48684 | Soybean | cytosol, endoplasmic reticulum | 33.15 | 37.4 |
| KRH03228 | Soybean | nucleus | 36.5 | 32.56 |
| KRH57127 | Soybean | endoplasmic reticulum, nucleus | 36.87 | 32.35 |
| KRG97325 | Soybean | endoplasmic reticulum | 32.22 | 29.27 |
| KRH31589 | Soybean | nucleus | 32.4 | 28.81 |
| KRH20283 | Soybean | plastid | 30.91 | 28.33 |
| KRH38030 | Soybean | endoplasmic reticulum | 32.03 | 28.15 |
| KRH71800 | Soybean | plastid | 31.84 | 27.99 |
| KRH58901 | Soybean | nucleus | 31.84 | 27.85 |
| KRH42811 | Soybean | endoplasmic reticulum | 31.84 | 27.63 |
| KRH30661 | Soybean | endoplasmic reticulum | 28.86 | 27.43 |
| KRG98124 | Soybean | endoplasmic reticulum | 28.68 | 26.97 |
| KRH03709 | Soybean | plastid | 30.17 | 26.56 |
| KRH68534 | Soybean | cytosol | 27.93 | 25.55 |
| KRG94409 | Soybean | cytosol | 27.93 | 25.51 |
| KRH51212 | Soybean | nucleus | 32.03 | 24.54 |
| KRH01937 | Soybean | nucleus | 31.66 | 24.08 |
| KRG93254 | Soybean | endoplasmic reticulum | 34.26 | 23.71 |
| KRH56577 | Soybean | nucleus | 33.89 | 23.48 |
| KRG96540 | Soybean | cytosol, mitochondrion | 32.96 | 23.05 |
| KRH68277 | Soybean | nucleus | 32.96 | 22.63 |
| KRH77709 | Soybean | nucleus | 32.77 | 15.94 |
| KRH27757 | Soybean | nucleus | 32.77 | 15.9 |
| KRH36905 | Soybean | nucleus | 34.26 | 15.79 |
| KRH11875 | Soybean | endoplasmic reticulum | 35.01 | 15.65 |
Protein Annotations
| EntrezGene:100806057 | Gene3D:3.40.50.300 | MapMan:35.1 | EMBL:ACUP02005947 | InterPro:DEAD/DEAH_box_helicase_dom | EnsemblPlantsGene:GLYMA_09G210700 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003824 | GO:GO:0004004 | GO:GO:0004386 |
| GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 |
| GO:GO:0005730 | GO:GO:0005737 | GO:GO:0006139 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009987 |
| GO:GO:0010501 | GO:GO:0016787 | InterPro:Helicase_ATP-bd | InterPro:Helicase_C | UniProt:I1L537 | InterPro:IPR001650 |
| InterPro:IPR014001 | InterPro:IPR014014 | EnsemblPlants:KRH39630 | ProteinID:KRH39630 | ProteinID:KRH39630.1 | InterPro:P-loop_NTPase |
| PFAM:PF00270 | PFAM:PF00271 | ScanProsite:PS00039 | PFscan:PS51192 | PFscan:PS51194 | PFscan:PS51195 |
| PANTHER:PTHR24031 | PANTHER:PTHR24031:SF215 | InterPro:RNA-helicase_DEAD-box_CS | InterPro:RNA_helicase_DEAD_Q_motif | SMART:SM00487 | SMART:SM00490 |
| SUPFAM:SSF52540 | UniParc:UPI0002337D27 | SEG:seg | : | : | : |
Description
hypothetical protein
Coordinates
chr9:-:43466653..43471567
Molecular Weight (calculated)
59090.9 Da
IEP (calculated)
9.120
GRAVY (calculated)
-0.500
Length
537 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRKHDAVLV SEPVAEEVPY SPELDSEKKK KKKKKKNKNK DKHQTDSSTK RKLDEQLDPQ NGIESNKKKK KHHESKQNAE ETNGNNNSDN GANRDETVAD
101: GSVVVTGKNA GDAKYAAVKS FADSGLPENV LECCKGFQKP SPIQSRAWPF LLDGRDLIGI AATGSGKTLA FGLPAVMHVL GKRKGKSSKG RNPLGLVLSP
201: TRELAQQISD VMCDAGRSCG VQSICLYGGT SKGPQISSLK SGIDIIIGTP GRIQDLIEMG ICCLKEVSFV VLDEADRMLD MGFEQIVRSI LGQTCSDRQM
301: VMFSATWPLP VHYLAQEFMD PNPVKVVVGS EDLAANHDVM QIVEVLDDRS RDKRLAALLE KYHKSQRNRV LVFVLYKLEA KRVENMLQEG GWKVVSIHGD
401: KAQHDRTKAL SLFKNGSCPL MIATDVAARG LDIPDVEVVI NYSFPLTTED YVHRIGRTGR AGKKGVAHTF FMQQNKGLAG ELVNVLREAG QIVPDALLKF
501: GTHVKKKESK LYGAHFKEIP VDAPKSQKKT FDDSDED
101: GSVVVTGKNA GDAKYAAVKS FADSGLPENV LECCKGFQKP SPIQSRAWPF LLDGRDLIGI AATGSGKTLA FGLPAVMHVL GKRKGKSSKG RNPLGLVLSP
201: TRELAQQISD VMCDAGRSCG VQSICLYGGT SKGPQISSLK SGIDIIIGTP GRIQDLIEMG ICCLKEVSFV VLDEADRMLD MGFEQIVRSI LGQTCSDRQM
301: VMFSATWPLP VHYLAQEFMD PNPVKVVVGS EDLAANHDVM QIVEVLDDRS RDKRLAALLE KYHKSQRNRV LVFVLYKLEA KRVENMLQEG GWKVVSIHGD
401: KAQHDRTKAL SLFKNGSCPL MIATDVAARG LDIPDVEVVI NYSFPLTTED YVHRIGRTGR AGKKGVAHTF FMQQNKGLAG ELVNVLREAG QIVPDALLKF
501: GTHVKKKESK LYGAHFKEIP VDAPKSQKKT FDDSDED
001: MAGQKQELPV SGEPLAVESP MTNKKKKKSK KNKHTEENHE VEEVPQEVTN GVEEELSNKE KKKKRKREEK ESEKNKKKDV PEKKLEAEDL GEGESEQQKV
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
101: VVTGKGVEEA KYAALKTFAE SNLPENVLDC CKTFEKPSPI QSHTWPFLLD GRDLIGIAKT GSGKTLAFGI PAIMHVLKKN KKIGGGSKKV NPTCLVLSPT
201: RELAVQISDV LREAGEPCGL KSICVYGGSS KGPQISAIRS GVDIVIGTPG RLRDLIESNV LRLSDVSFVV LDEADRMLDM GFEEPVRFIL SNTNKVRQMV
301: MFSATWPLDV HKLAQEFMDP NPIKVIIGSV DLAANHDVMQ IIEVLDERAR DQRLIALLEK YHKSQKNRVL VFALYKVEAE RLERFLQQRG WKAVSIHGNK
401: AQSERTRSLS LFKEGSCPLL VATDVAARGL DIPDVEVVIN YTFPLTTEDY VHRIGRTGRA GKKGVAHTFF TPLNKGLAGE LVNVLREAGQ VVPADLLKFG
501: THVKKKESKL YGAHFKEIAA DAPKATKITF DNSDDED
Arabidopsis Description
RH5STRS1 [Source:UniProtKB/TrEMBL;Acc:A0A178W5E1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.